Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000135`

染色体: Chr08 坐标: 841103-845673 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000135`
名称	SmilChr08G000135
描述	protein IQ-DOMAIN 14-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	841103 - 845673 / `-`

ID 对照

NCBI Gene ID	`LOC130999759`
GeneID	`130999759`
locus_tag	`-`
NCBI Name	`LOC130999759`
原始查询	`SmilChr08G000135`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IQ-DOMAIN 14-like
产物	protein IQ-DOMAIN 14-like
Arabidopsis	`AT3G59690` (IQD13) IQ-domain 13 [Source:NCBI gene (formerly Entrezgene);Acc:825138] identity=44.6; qcov=1.09; evalue=4.49e-114; confidence=medium
Rice	`Os01g0896200` - identity=34.2; qcov=0.711; evalue=1.13e-34; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00612 (IQ); PF13178 (DUF4005)
InterPro	-
eggNOG	-
NR	GeneID:130999759

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057781363.1`
2	Cell membrane	细胞膜	1.00000	`XP_057781363.1`
3	Nucleus	细胞核	0.40000	`XP_057781363.1`
4	Nucleus membrane	核膜	0.20000	`XP_057781363.1`
5	Chromosome	染色体	0.00000	`XP_057781363.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:841293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr8:841342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B21,C19,C48
`Chr8:841383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr8:841432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C52,C75
`Chr8:841517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B24,C29
`Chr8:841530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr8:841532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C37,C43
`Chr8:841570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr8:841602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr8:841603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr8:841637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr8:841663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781363.1

509 aa

254

509

DUF4005

PF00612 IQ 154-174 aa PF13178 DUF4005 349-456 aa

XP_057781364.1

509 aa

254

509

DUF4005

PF00612 IQ 154-174 aa PF13178 DUF4005 349-456 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781363.1`	Pfam	`PF00612`	IQ	Motif	154	174	1.4e-06	28.2	IQ calmodulin-binding motif
`XP_057781363.1`	Pfam	`PF13178`	DUF4005	Family	349	456	1.9e-09	38.7	Protein of unknown function (DUF4005)
`XP_057781364.1`	Pfam	`PF00612`	IQ	Motif	154	174	1.4e-06	28.2	IQ calmodulin-binding motif
`XP_057781364.1`	Pfam	`PF13178`	DUF4005	Family	349	456	1.9e-09	38.7	Protein of unknown function (DUF4005)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925380.1
GTTTTTAACTAAAGAACATTCGAAAATGAATATTCTATTCATTTCCAATTTCATTCAAAAATTTACCTTTTCTATTTATAGATTCTAATGTAAAATGTCTACAGTAGTTTTTTTTATTCTTCAAGATTTGCACCTGTTGCTGTTGGTCAGTTTTTCTCACTTGCAGAAAGTAAAAAATAAGCATATATTATACCTTTCATCATCATCATGAATCATCATGATTCCACAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA...

XM_057925381.1
CATCATGAATCATCATGATTCCACAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAGTTGCAATATTTTGCAAGCAAGAATCTAACTCTAAAGCTCAACATATTCAAACATTCAACAACACACACATACACACATTCTGAGGTGTAGAAGTTGGAAAAAAGATTCAGAGAGAGAGAGAGAGAGAGAGAGGGTAGCTAGATTACGAAGGAAAGAAGCATGCTGTTATTCTACACTAAGAAAGAGGATGGCTAGA...

CDS

2 records

下载 CDS FASTA

LOC130999759
ATGGGAAAGAAGGGAAGCTGGTTTTCGACAATCAAGAGAGTTTTCGTGCACGAATCAAAGGACAAGCCATCATCCTATGGATCAGATAAGAGAAGCAGCAAGGAGAAGAAGGCAAGTAAAGGGATTTTACATCATGGTGAAGCAAAATCGTTCCTTCCTCGATTCAAAGAGCCGAGCAGCATCGAGAAGATATTAGGGGAGGCGGATCAACTGCTCGTGAGGCCGCCTCCGGCATCTTCAGCGGAGACAAGGGTCCCACC...

Protein

2 records

下载 Protein FASTA

XP_057781363.1
MGKKGSWFSTIKRVFVHESKDKPSSYGSDKRSSKEKKASKGILHHGEAKSFLPRFKEPSSIEKILGEADQLLVRPPPASSAETRVPPASLWRPASPTTAPYGATSPNAASQRVSSTRFTSLRTTLPPALTPEANQSRWEVRYVQRPEMSMRNQHRSATMIQSTFRGYLARRNFRALRGLVRLQGVVRSTNAKRQTMNAMKQMQLLVRIQTQIQSRRVQMLENQAIQHQAYRNNKELESNNLSKWSLNQLHEAGDSDDWDD...

XP_057781364.1
MGKKGSWFSTIKRVFVHESKDKPSSYGSDKRSSKEKKASKGILHHGEAKSFLPRFKEPSSIEKILGEADQLLVRPPPASSAETRVPPASLWRPASPTTAPYGATSPNAASQRVSSTRFTSLRTTLPPALTPEANQSRWEVRYVQRPEMSMRNQHRSATMIQSTFRGYLARRNFRALRGLVRLQGVVRSTNAKRQTMNAMKQMQLLVRIQTQIQSRRVQMLENQAIQHQAYRNNKELESNNLSKWSLNQLHEAGDSDDWDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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