Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000139`

染色体: Chr08 坐标: 871611-915094 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000139`
名称	SmilChr08G000139
描述	putative disease resistance protein RGA1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	871611 - 915094 / `+`

ID 对照

NCBI Gene ID	`LOC130999763`
GeneID	`130999763`
locus_tag	`-`
NCBI Name	`LOC130999763`
原始查询	`SmilChr08G000139`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA1
产物	putative disease resistance protein RGA1
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.7; qcov=0.778; evalue=3.89e-113; confidence=low
Rice	`Os05g0492200` (YR1) - identity=31.6; qcov=0.883; evalue=3.78e-129; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999763

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057781369.1`
2	Cytosol	细胞质基质	0.40000	`XP_057781369.1`
3	Cytoplasm	细胞质	0.20000	`XP_057781369.1`
4	Nucleus	细胞核	0.00000	`XP_057781369.1`
5	Chromosome	染色体	0.00000	`XP_057781369.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:871716`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B137,C80
`Chr8:871719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr8:871722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B42,B81
`Chr8:871724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,C13,C43
`Chr8:871729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B19,B42,B76,C39,C48
`Chr8:871739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,B140
`Chr8:871777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B140,B89
`Chr8:871802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B123,B20,B53,C51
`Chr8:871813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B16,B86,B87,C78
`Chr8:871817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C15,C56
`Chr8:871826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,B52,C74
`Chr8:871827`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B86,B87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781369.1

1324 aa

662

1324

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 8-95 aa PF00931 NB-ARC 176-348 aa PF23559 WHD_DRP 429-500 aa PF23598 LRR_14 541-884 aa PF25019 LRR_R13L1-DRL21 668-802 aa PF23247 LRR_RPS2 854-960 aa PF23247 LRR_RPS2 933-1059 aa PF23247 LRR_RPS2 1020-1142 aa

XP_057781370.1

1324 aa

662

1324

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

XP_057781371.1

1324 aa

662

1324

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

XP_057781372.1

1324 aa

662

1324

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781369.1`	Pfam	`PF18052`	Rx_N	Domain	8	95	1.6e-19	70.5	Rx N-terminal domain
`XP_057781369.1`	Pfam	`PF00931`	NB-ARC	Domain	176	348	4.9e-35	121.3	NB-ARC domain
`XP_057781369.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	500	3.6e-24	85.3	Disease resistance protein Winged helix domain
`XP_057781369.1`	Pfam	`PF23598`	LRR_14	Repeat	541	884	2e-40	139.3	Leucine-rich repeat region
`XP_057781369.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	668	802	5.7e-51	172.4	R13L1/DRL21 LRRs
`XP_057781369.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	854	960	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781369.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	933	1059	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781369.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	1020	1142	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781370.1`	Pfam	`PF18052`	Rx_N	Domain	8	95	1.6e-19	70.5	Rx N-terminal domain
`XP_057781370.1`	Pfam	`PF00931`	NB-ARC	Domain	176	348	4.9e-35	121.3	NB-ARC domain
`XP_057781370.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	500	3.6e-24	85.3	Disease resistance protein Winged helix domain
`XP_057781370.1`	Pfam	`PF23598`	LRR_14	Repeat	541	884	2e-40	139.3	Leucine-rich repeat region
`XP_057781370.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	668	802	5.7e-51	172.4	R13L1/DRL21 LRRs
`XP_057781370.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	854	960	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781370.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	933	1059	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781370.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	1020	1142	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781371.1`	Pfam	`PF18052`	Rx_N	Domain	8	95	1.6e-19	70.5	Rx N-terminal domain
`XP_057781371.1`	Pfam	`PF00931`	NB-ARC	Domain	176	348	4.9e-35	121.3	NB-ARC domain
`XP_057781371.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	500	3.6e-24	85.3	Disease resistance protein Winged helix domain
`XP_057781371.1`	Pfam	`PF23598`	LRR_14	Repeat	541	884	2e-40	139.3	Leucine-rich repeat region
`XP_057781371.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	668	802	5.7e-51	172.4	R13L1/DRL21 LRRs
`XP_057781371.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	854	960	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781371.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	933	1059	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781371.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	1020	1142	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781372.1`	Pfam	`PF18052`	Rx_N	Domain	8	95	1.6e-19	70.5	Rx N-terminal domain
`XP_057781372.1`	Pfam	`PF00931`	NB-ARC	Domain	176	348	4.9e-35	121.3	NB-ARC domain
`XP_057781372.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	500	3.6e-24	85.3	Disease resistance protein Winged helix domain
`XP_057781372.1`	Pfam	`PF23598`	LRR_14	Repeat	541	884	2e-40	139.3	Leucine-rich repeat region
`XP_057781372.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	668	802	5.7e-51	172.4	R13L1/DRL21 LRRs
`XP_057781372.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	854	960	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781372.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	933	1059	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781372.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	1020	1142	1.1e-25	91.2	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925389.1
CAGCACCACTCATCTCATGCAATTCTATTCCTTAGTCTTCTTTCTCTTTCTCACTCAATTTCTTTCTTTCTCTCTCTAAGTTATCAGCACAAAGAATGGAAGGAGGAGCTGCTGCTGCCGTTGAAGTTCTAGTTCAAAACCTCATCGACCTTTCCAAGAAAGAGATCTCTCAAATCCGAGGTCTCCACAAAGATGCAGCAAAGCTAGCTGGGAGTCTCGACGTGATCAAAAATTTCTTGAAGGATGCCGAGACGCGTGAC...

XM_057925386.1
CAGCACCACTCATCTCATGCAATTCTATTCCTTAGTCTTCTTTCTCTTTCTCACTCAATTTCTTTCTTTCTCTCTCTAAGTTATCAGCACAAAGAATGGAAGGAGGAGCTGCTGCTGCCGTTGAAGTTCTAGTTCAAAACCTCATCGACCTTTCCAAGAAAGAGATCTCTCAAATCCGAGGTCTCCACAAAGATGCAGCAAAGCTAGCTGGGAGTCTCGACGTGATCAAAAATTTCTTGAAGGATGCCGAGACGCGTGAC...

CDS

4 records

下载 CDS FASTA

LOC130999763
ATGGAAGGAGGAGCTGCTGCTGCCGTTGAAGTTCTAGTTCAAAACCTCATCGACCTTTCCAAGAAAGAGATCTCTCAAATCCGAGGTCTCCACAAAGATGCAGCAAAGCTAGCTGGGAGTCTCGACGTGATCAAAAATTTCTTGAAGGATGCCGAGACGCGTGACATCACCAGTGATGCTGTCAAGAGCTGGCTGAAGAAGCTTGAAAACGAGGCGTTCGATGCTGACAATGTTTTGGATGAACTCAACTATCATATTCT...

Protein

4 records

下载 Protein FASTA

XP_057781369.1
MEGGAAAAVEVLVQNLIDLSKKEISQIRGLHKDAAKLAGSLDVIKNFLKDAETRDITSDAVKSWLKKLENEAFDADNVLDELNYHILSKKIKATKPMKAKVLSCFSSSFSSIARPRKMAVKIQEINENLESIKKEATELGLIAKLENEPILVNTAIFETDSFTDDPIFIGRDDVASKIVGMLMNGIKTDERAVSILPIVGMGGLGKTTLTRKVFNRLKNETQFGSYLWVHVSPNFDAITLFKKILNNLTSCQVEIASRED...

XP_057781370.1
MEGGAAAAVEVLVQNLIDLSKKEISQIRGLHKDAAKLAGSLDVIKNFLKDAETRDITSDAVKSWLKKLENEAFDADNVLDELNYHILSKKIKATKPMKAKVLSCFSSSFSSIARPRKMAVKIQEINENLESIKKEATELGLIAKLENEPILVNTAIFETDSFTDDPIFIGRDDVASKIVGMLMNGIKTDERAVSILPIVGMGGLGKTTLTRKVFNRLKNETQFGSYLWVHVSPNFDAITLFKKILNNLTSCQVEIASRED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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