Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000140`

染色体: Chr08 坐标: 893601-907715 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000140`
名称	SmilChr08G000140
描述	putative disease resistance protein RGA3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	893601 - 907715 / `+`

ID 对照

NCBI Gene ID	`LOC130999769`
GeneID	`130999769`
locus_tag	`-`
NCBI Name	`LOC130999769`
原始查询	`SmilChr08G000140`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA3
产物	putative disease resistance protein RGA3
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=32.7; qcov=1.05; evalue=9.15e-89; confidence=low
Rice	`Os08g0543100` - identity=32.4; qcov=1.05; evalue=1.43e-94; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130999769

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781385.1`
2	Nucleus	细胞核	0.00000	`XP_057781385.1`
3	Chromosome	染色体	0.00000	`XP_057781385.1`
4	Centromere	着丝粒	0.00000	`XP_057781385.1`
5	Chromatin	染色质	0.00000	`XP_057781385.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:893691`	`CTA`	`C`	2bp_deletion	frameshift_variant	12	A9,B117,B128,B29,B51,B66,C27,C30,C35,C38,C43,C63
`Chr8:893708`	`AGG`	`A`	2bp_deletion	frameshift_variant	5	B39,B63,B82,C21,C48
`Chr8:893708`	`AGG`	`A`	2bp_deletion	CDS_variant	5	B39,B63,B82,C21,C48
`Chr8:902837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,C30,D1
`Chr8:902857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B136,C30
`Chr8:902869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,A3,B115,B12
`Chr8:902883`	`GT`	`G`	1bp_deletion	frameshift_variant	10	B103,B121,B85,B93,C16,C23,C48,C53,C54,C72
`Chr8:902891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,C30
`Chr8:902919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B114,B18,B73,C47
`Chr8:902946`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B123,B55,B75,C69
`Chr8:902952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B123,B75,C69
`Chr8:902955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B69,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781385.1

706 aa

353

706

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF18052 Rx_N 45-133 aa PF00931 NB-ARC 220-385 aa PF13401 AAA_22 235-321 aa PF23559 WHD_DRP 469-540 aa PF23598 LRR_14 575-696 aa

XP_057781386.1

706 aa

353

706

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF18052 Rx_N 45-133 aa PF00931 NB-ARC 220-385 aa PF13401 AAA_22 235-321 aa PF23559 WHD_DRP 469-540 aa PF23598 LRR_14 575-696 aa

XP_057781387.1

706 aa

353

706

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF18052 Rx_N 45-133 aa PF00931 NB-ARC 220-385 aa PF13401 AAA_22 235-321 aa PF23559 WHD_DRP 469-540 aa PF23598 LRR_14 575-696 aa

XP_057781388.1

706 aa

353

706

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF18052 Rx_N 45-133 aa PF00931 NB-ARC 220-385 aa PF13401 AAA_22 235-321 aa PF23559 WHD_DRP 469-540 aa PF23598 LRR_14 575-696 aa

XP_057781389.1

692 aa

346

692

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF18052 Rx_N 31-119 aa PF00931 NB-ARC 206-371 aa PF13401 AAA_22 221-307 aa PF23559 WHD_DRP 455-526 aa PF23598 LRR_14 561-682 aa

XP_057781390.1

670 aa

335

670

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF18052 Rx_N 9-97 aa PF00931 NB-ARC 184-349 aa PF13401 AAA_22 199-285 aa PF23559 WHD_DRP 433-504 aa PF23598 LRR_14 539-660 aa

XP_057781391.1

670 aa

335

670

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

PF18052 Rx_N 9-97 aa PF00931 NB-ARC 184-349 aa PF13401 AAA_22 199-285 aa PF23559 WHD_DRP 433-504 aa PF23598 LRR_14 539-660 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781385.1`	Pfam	`PF18052`	Rx_N	Domain	45	133	1.5e-21	77.0	Rx N-terminal domain
`XP_057781385.1`	Pfam	`PF00931`	NB-ARC	Domain	220	385	3.3e-35	121.9	NB-ARC domain
`XP_057781385.1`	Pfam	`PF13401`	AAA_22	Domain	235	321	2.2e-07	32.0	AAA domain
`XP_057781385.1`	Pfam	`PF23559`	WHD_DRP	Domain	469	540	1.5e-25	89.7	Disease resistance protein Winged helix domain
`XP_057781385.1`	Pfam	`PF23598`	LRR_14	Repeat	575	696	3.1e-20	72.9	Leucine-rich repeat region
`XP_057781386.1`	Pfam	`PF18052`	Rx_N	Domain	45	133	1.5e-21	77.0	Rx N-terminal domain
`XP_057781386.1`	Pfam	`PF00931`	NB-ARC	Domain	220	385	3.3e-35	121.9	NB-ARC domain
`XP_057781386.1`	Pfam	`PF13401`	AAA_22	Domain	235	321	2.2e-07	32.0	AAA domain
`XP_057781386.1`	Pfam	`PF23559`	WHD_DRP	Domain	469	540	1.5e-25	89.7	Disease resistance protein Winged helix domain
`XP_057781386.1`	Pfam	`PF23598`	LRR_14	Repeat	575	696	3.1e-20	72.9	Leucine-rich repeat region
`XP_057781387.1`	Pfam	`PF18052`	Rx_N	Domain	45	133	1.5e-21	77.0	Rx N-terminal domain
`XP_057781387.1`	Pfam	`PF00931`	NB-ARC	Domain	220	385	3.3e-35	121.9	NB-ARC domain
`XP_057781387.1`	Pfam	`PF13401`	AAA_22	Domain	235	321	2.2e-07	32.0	AAA domain
`XP_057781387.1`	Pfam	`PF23559`	WHD_DRP	Domain	469	540	1.5e-25	89.7	Disease resistance protein Winged helix domain
`XP_057781387.1`	Pfam	`PF23598`	LRR_14	Repeat	575	696	3.1e-20	72.9	Leucine-rich repeat region
`XP_057781388.1`	Pfam	`PF18052`	Rx_N	Domain	45	133	1.5e-21	77.0	Rx N-terminal domain
`XP_057781388.1`	Pfam	`PF00931`	NB-ARC	Domain	220	385	3.3e-35	121.9	NB-ARC domain
`XP_057781388.1`	Pfam	`PF13401`	AAA_22	Domain	235	321	2.2e-07	32.0	AAA domain
`XP_057781388.1`	Pfam	`PF23559`	WHD_DRP	Domain	469	540	1.5e-25	89.7	Disease resistance protein Winged helix domain
`XP_057781388.1`	Pfam	`PF23598`	LRR_14	Repeat	575	696	3.1e-20	72.9	Leucine-rich repeat region
`XP_057781389.1`	Pfam	`PF18052`	Rx_N	Domain	31	119	1.5e-21	77.0	Rx N-terminal domain
`XP_057781389.1`	Pfam	`PF00931`	NB-ARC	Domain	206	371	3e-35	122.0	NB-ARC domain
`XP_057781389.1`	Pfam	`PF13401`	AAA_22	Domain	221	307	2e-07	32.1	AAA domain
`XP_057781389.1`	Pfam	`PF23559`	WHD_DRP	Domain	455	526	1.4e-25	89.8	Disease resistance protein Winged helix domain
`XP_057781389.1`	Pfam	`PF23598`	LRR_14	Repeat	561	682	3e-20	73.0	Leucine-rich repeat region
`XP_057781390.1`	Pfam	`PF18052`	Rx_N	Domain	9	97	2.7e-21	76.2	Rx N-terminal domain
`XP_057781390.1`	Pfam	`PF00931`	NB-ARC	Domain	184	349	3.1e-35	122.0	NB-ARC domain
`XP_057781390.1`	Pfam	`PF13401`	AAA_22	Domain	199	285	2.1e-07	32.0	AAA domain
`XP_057781390.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	504	1.5e-25	89.8	Disease resistance protein Winged helix domain
`XP_057781390.1`	Pfam	`PF23598`	LRR_14	Repeat	539	660	3.3e-20	72.9	Leucine-rich repeat region
`XP_057781391.1`	Pfam	`PF18052`	Rx_N	Domain	9	97	2.7e-21	76.2	Rx N-terminal domain
`XP_057781391.1`	Pfam	`PF00931`	NB-ARC	Domain	184	349	3.1e-35	122.0	NB-ARC domain
`XP_057781391.1`	Pfam	`PF13401`	AAA_22	Domain	199	285	2.1e-07	32.0	AAA domain
`XP_057781391.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	504	1.5e-25	89.8	Disease resistance protein Winged helix domain
`XP_057781391.1`	Pfam	`PF23598`	LRR_14	Repeat	539	660	3.3e-20	72.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057925406.1
CTATAAACTCGGCTATAAACTCTTGAGCTTGCATCACTCATCCAATTCTGCTCCTTAATCCTCTCTCTCTCTCTCTCTCTCACTGAATTTCTATGTCTCTCTCTCTAAGGAAGCAGCAGCTGCTACCGCCGTCTTTAATTAAGTTATCAGCACAAACAATGGAAGGAGAAGCTGCTGCCGCCGTCCTTCAAACTCTAGTTCAAAACCTCATCGACCTTTGCAAGAAAGAGATCTCTCAGATCCGAGATCTCGACAAAAAT...

XM_057925408.1
AACTCGGCTATAAACTCTTGAGCTTGCATCACTCATCCAATTCTGCTCCTTAATCCTCTCTCTCTCTCTCTCTCTCACTGAATTTCTATGTCTCTCTCTCTAAGGAAGCAGCAGCTGCTACCGCCGTCTTTAATTAAGCACAAACAATGGAAGGAGAAGCTGCTGCCGCCGTCCTTCAAACTCTAGTTCAAAACCTCATCGACCTTTGCAAGAAAGAGATCTCTCAGATCCGAGATCTCGACAAAAATACAGCAAAGCTA...

CDS

7 records

下载 CDS FASTA

LOC130999769
ATGTCTCTCTCTCTAAGGAAGCAGCAGCTGCTACCGCCGTCTTTAATTAAGTTATCAGCACAAACAATGGAAGGAGAAGCTGCTGCCGCCGTCCTTCAAACTCTAGTTCAAAACCTCATCGACCTTTGCAAGAAAGAGATCTCTCAGATCCGAGATCTCGACAAAAATACAGCAAAGCTAGCTGGGAATCTCGACATGATCAAAAATTTCTTGAAGGATGCCGAGACGCGTAACATCACCAACGATGCTGTCAAGAGCTG...

LOC130999769
ATGAAAGGCTGTAAAATCTTGAGCTTGCATCACTCATCCAATTCTACTGCTTTGCTATCTCTCTCACTCAATTTCTCTCTTTCTCTCTCCAAGTTATCAGCACAAACAATGGAAGGAGAAGCTGCTGCCGCCGTCCTTCAAACTCTAGTTCAAAACCTCATCGACCTTTGCAAGAAAGAGATCTCTCAGATCCGAGATCTCGACAAAAATACAGCAAAGCTAGCTGGGAATCTCGACATGATCAAAAATTTCTTGAAGGA...

Protein

7 records

下载 Protein FASTA

XP_057781385.1
MKGCKILSLHHSSNSTALLSLSLNFSLSLSKLSAQTMEGEAAAAVLQTLVQNLIDLCKKEISQIRDLDKNTAKLAGNLDMIKNFLKDAETRNITNDAVKSWLKRLEDVAFDADNVLDEINYNILSKQIKPTEPEEEEVPSCFSRLSCFSCCKNLSRSRNMALTIKEINENLESINKEAANLGLVEKLANEPTLVIASSETDSFSDDPVFIGRDGVKLEIVEMLTNSITNDERKVSIISIVGMGGLGKTTLTRKVFNHLKD...

XP_057781386.1
MKGCKILSLHHSSNSTALLSLSLNFSLSLSKLSAQTMEGEAAAAVLQTLVQNLIDLCKKEISQIRDLDKNTAKLAGNLDMIKNFLKDAETRNITNDAVKSWLKRLEDVAFDADNVLDEINYNILSKQIKPTEPEEEEVPSCFSRLSCFSCCKNLSRSRNMALTIKEINENLESINKEAANLGLVEKLANEPTLVIASSETDSFSDDPVFIGRDGVKLEIVEMLTNSITNDERKVSIISIVGMGGLGKTTLTRKVFNHLKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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