当前解析结果
SmilChr08G000144| 统一新 Gene ID | SmilChr08G000144 |
|---|---|
| 名称 | SmilChr08G000144 |
| 描述 | disease resistance protein RGA2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 941551 - 958105 / + |
| NCBI Gene ID | LOC130999764 |
|---|---|
| GeneID | 130999764 |
| locus_tag | - |
| NCBI Name | LOC130999764 |
| 原始查询 | SmilChr08G000144 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RGA2-like |
| 产物 | disease resistance protein RGA2-like |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=32.2; qcov=0.906; evalue=2.24e-115; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=32.5; qcov=1.01; evalue=5.02e-129; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999764 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781373.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057781373.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781373.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781373.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781373.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:941684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:941834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,B44 |
Chr8:941880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B53,C54 |
Chr8:941954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B131,B44,C18 |
Chr8:941975 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr8:942046 |
AG |
A |
1bp_deletion | frameshift_variant | 10 | A7,B5,B67,B76,B98,C16,C33,C58,C60,D7 |
Chr8:942050 |
C |
CT |
1bp_insertion | frameshift_variant | 10 | A7,B5,B67,B76,B98,C16,C33,C58,C60,D7 |
Chr8:942060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr8:942062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B16,B49,C9 |
Chr8:942068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B25,B96,C87 |
Chr8:942093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr8:942101 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,B82,C31,C6,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781373.1PF18052
Rx_N 9-98 aa
PF00931
NB-ARC 178-344 aa
PF23559
WHD_DRP 428-499 aa
PF23598
LRR_14 540-864 aa
PF25019
LRR_R13L1-DRL21 668-803 aa
PF23247
LRR_RPS2 821-939 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781373.1 |
Pfam | PF18052 |
Rx_N | Domain | 9 | 98 | 1.3e-22 | 80.5 | Rx N-terminal domain |
XP_057781373.1 |
Pfam | PF00931 |
NB-ARC | Domain | 178 | 344 | 7.6e-33 | 114.2 | NB-ARC domain |
XP_057781373.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 428 | 499 | 2.2e-25 | 89.2 | Disease resistance protein Winged helix domain |
XP_057781373.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 864 | 6.4e-35 | 121.3 | Leucine-rich repeat region |
XP_057781373.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 668 | 803 | 7.2e-45 | 152.7 | R13L1/DRL21 LRRs |
XP_057781373.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 821 | 939 | 7.8e-12 | 46.2 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。