当前解析结果
SmilChr08G000153| 统一新 Gene ID | SmilChr08G000153 |
|---|---|
| 名称 | SmilChr08G000153 |
| 描述 | uncharacterized SmilChr08G000153 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1007789 - 1012682 / - |
| NCBI Gene ID | LOC130999776 |
|---|---|
| GeneID | 130999776 |
| locus_tag | - |
| NCBI Name | LOC130999776 |
| 原始查询 | SmilChr08G000153 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsRFPV-7; symbol=OsRFPV-7; hit=Os01g0894600; species=rice; confidence=high |
| 产物 | OsRFPV-7; symbol=OsRFPV-7; hit=Os01g0894600; species=rice; confidence=high |
| Arabidopsis | AT5G62460 (AT5G62460)RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836366] identity=42.3; qcov=1.02; evalue=1.28e-49; confidence=medium |
| Rice | Os01g0894600 (OsRFPV-7)- identity=54.5; qcov=0.733; evalue=7.65e-61; confidence=high |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0008270 (zinc ion binding); GO:0016020 (membrane); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF12428 (DUF3675); PF12906 (RINGv) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999776 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781395.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057781396.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057781395.1 |
| 4 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057781395.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057781395.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1008064 |
G |
GC |
1bp_insertion | frameshift_variant | 41 | A16,A2,A4,B106,B110,B112,B119,B120,B121,B122,B127,B128,B131,B133,B139,B14,B15,B28,B32,B38,B4,B6,B63,B7,B76,B85,B88,B9,B97,C24,C25,C26,C29,C39,C46,C49,C55,C60,C67,C78,D5 |
Chr8:1008958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C3,C79 |
Chr8:1009156 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B26,C49,C50,C87 |
Chr8:1009382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B103,B114,B65 |
Chr8:1009403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:1009963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B126,B38,B39,B42,B43 |
Chr8:1012220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C84 |
Chr8:1012249 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A25,C44 |
Chr8:1012249 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,C44 |
Chr8:1012324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B105 |
Chr8:1012397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B75,B95,B99,C37,C61 |
Chr8:1012457 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,C74,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781395.1PF12906
RINGv 75-120 aa
PF12428
DUF3675 126-243 aa
XP_057781396.1PF12906
RINGv 75-120 aa
PF12428
DUF3675 126-243 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781395.1 |
Pfam | PF12906 |
RINGv | Domain | 75 | 120 | 8.4e-14 | 52.2 | RING-variant domain |
XP_057781395.1 |
Pfam | PF12428 |
DUF3675 | Family | 126 | 243 | 2.5e-31 | 109.4 | Protein of unknown function (DUF3675) |
XP_057781396.1 |
Pfam | PF12906 |
RINGv | Domain | 75 | 120 | 8.2e-14 | 52.2 | RING-variant domain |
XP_057781396.1 |
Pfam | PF12428 |
DUF3675 | Family | 126 | 243 | 2.3e-31 | 109.5 | Protein of unknown function (DUF3675) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。