Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000159`

染色体: Chr08 坐标: 1051769-1059491 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000159`
名称	SmilChr08G000159
描述	uncharacterized SmilChr08G000159
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1051769 - 1059491 / `-`

ID 对照

NCBI Gene ID	`LOC130997013`
GeneID	`130997013`
locus_tag	`-`
NCBI Name	`LOC130997013`
原始查询	`SmilChr08G000159`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828715]; symbol=RPS2; hit=AT4G26090; species=arabidopsis; confidence=low
产物	NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828715]; symbol=RPS2; hit=AT4G26090; species=arabidopsis; confidence=low
Arabidopsis	`AT4G26090` (RPS2) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828715] identity=25; qcov=0.514; evalue=7.27e-44; confidence=low
Rice	`Os04g0470500` - identity=28.1; qcov=0.292; evalue=6.13e-34; confidence=weak
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13855 (LRR_8); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130997013

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057778275.1`
2	Cytosol	细胞质基质	0.40000	`XP_057778275.1`
3	Cytoplasm	细胞质	0.20000	`XP_057778275.1`
4	Nucleus	细胞核	0.00000	`XP_057778275.1`
5	Chromosome	染色体	0.00000	`XP_057778275.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1051880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr8:1051890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr8:1051913`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr8:1051956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:1051977`	`AC`	`A`	1bp_deletion	frameshift_variant	2	B72,C9
`Chr8:1051977`	`AC`	`A`	1bp_deletion	CDS_variant	2	B72,C9
`Chr8:1051983`	`A`	`AC`	1bp_insertion	frameshift_variant	2	B72,C9
`Chr8:1051983`	`A`	`AC`	1bp_insertion	CDS_variant	2	B72,C9
`Chr8:1052006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:1052008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr8:1052026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:1052189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B97,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778275.1

1672 aa

836

1672

NB-ARC

WHD_DRP

LRR_8

LRR_14

LRR_RPS2

LRR_8

LRR_RPS2

PF00931 NB-ARC 185-353 aa PF23559 WHD_DRP 440-501 aa PF13855 LRR_8 572-617 aa PF23598 LRR_14 586-738 aa PF23247 LRR_RPS2 832-925 aa PF13855 LRR_8 1194-1237 aa PF23247 LRR_RPS2 1410-1507 aa PF23247 LRR_RPS2 1464-1569 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778275.1`	Pfam	`PF00931`	NB-ARC	Domain	185	353	5.9e-12	46.2	NB-ARC domain
`XP_057778275.1`	Pfam	`PF23559`	WHD_DRP	Domain	440	501	5.3e-07	30.3	Disease resistance protein Winged helix domain
`XP_057778275.1`	Pfam	`PF13855`	LRR_8	Repeat	572	617	3.7e-17	62.5	Leucine rich repeat
`XP_057778275.1`	Pfam	`PF23598`	LRR_14	Repeat	586	738	1.2e-23	84.2	Leucine-rich repeat region
`XP_057778275.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	832	925	2.1e-42	145.5	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057778275.1`	Pfam	`PF13855`	LRR_8	Repeat	1194	1237	3.7e-17	62.5	Leucine rich repeat
`XP_057778275.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	1410	1507	2.1e-42	145.5	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057778275.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	1464	1569	2.1e-42	145.5	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922292.1
TTTTGTGGGATTCTTGTTTCATCAATTTTGGCACGCAGCTGTTGTACCAAGAGCATTTTCTGTTGTACTTCGTGGGATTCTTGTTTCACCATCCAGGATGGCGGCGGCGGAATCATTGTCGGCTCAAAGTTCTGGCGCTGCGTACAACTTTTTTAAAGACATGTACCTGTACCTAAAGGGTGAGCGACAAGACGCCAAGGATTTGGAAAAACGAATAAGTGAGCTGATAGAAAATCTGACGTTCTTACACTCAGAGGATG...

CDS

1 records

下载 CDS FASTA

LOC130997013
ATGGCGGCGGCGGAATCATTGTCGGCTCAAAGTTCTGGCGCTGCGTACAACTTTTTTAAAGACATGTACCTGTACCTAAAGGGTGAGCGACAAGACGCCAAGGATTTGGAAAAACGAATAAGTGAGCTGATAGAAAATCTGACGTTCTTACACTCAGAGGATGAAAAAATCGAACGATCCTTGACAAGTTTGGTCTCCGCAGAGAAAACCAAATTCTACGAAACGATGAAAGCAAGGATCGCCGGCATCGATAAACAAAC...

Protein

1 records

下载 Protein FASTA

XP_057778275.1
MAAAESLSAQSSGAAYNFFKDMYLYLKGERQDAKDLEKRISELIENLTFLHSEDEKIERSLTSLVSAEKTKFYETMKARIAGIDKQTSKLINKYTRLTGNHLSATTPSSSIETLNDLKSKMATLNFFKLAGLSQDVAKLNKRALDLAVKLKPDYMIQKKAKPNQQKLDEDANALPVFDQYVNEIYHLFENEGCNCVGILGCEGAGKTTVLRKLYNRLLEDSLSGDEEHLKLDHIIRIDYPPVSEKEEDKNMNVEKLQNEM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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