Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000161

染色体: Chr08 坐标: 1081761-1083686 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000161
名称SmilChr08G000161
描述uncharacterized SmilChr08G000161
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向1081761 - 1083686 / +

ID 对照

NCBI Gene IDLOC130999778
GeneID130999778
locus_tag-
NCBI NameLOC130999778
原始查询SmilChr08G000161

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述disease resistance protein (CC-NBS-LRR class) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841573]; symbol=AT1G51480; hit=AT1G51480; species=arabidopsis; confidence=low
产物disease resistance protein (CC-NBS-LRR class) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841573]; symbol=AT1G51480; hit=AT1G51480; species=arabidopsis; confidence=low
ArabidopsisAT1G51480 (AT1G51480)
disease resistance protein (CC-NBS-LRR class) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841573]
identity=26.7; qcov=0.386; evalue=4.83e-07; confidence=low
Rice-
-
GOGO:0043531 (ADP binding)
KEGG-
PfamPF00931 (NB-ARC)
InterPro-
eggNOG-
NRGeneID:130999778

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057781399.1
2 Cytosol 细胞质基质 0.40000 XP_057781399.1
3 Nucleus 细胞核 0.00000 XP_057781399.1
4 Chromosome 染色体 0.00000 XP_057781399.1
5 Centromere 着丝粒 0.00000 XP_057781399.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:1082723 G A EMS_canonical_SNV CDS_variant 2 B138,B73
Chr8:1082770 C T EMS_canonical_SNV CDS_variant 5 B112,B124,B48,C28,C82
Chr8:1082825 C T EMS_canonical_SNV CDS_variant 3 A9,B112,B83
Chr8:1082855 C T EMS_canonical_SNV CDS_variant 1 D4
Chr8:1082857 C T EMS_canonical_SNV CDS_variant 2 B62,C18
Chr8:1083092 G A EMS_canonical_SNV CDS_variant 1 B81
Chr8:1083233 A AC 1bp_insertion frameshift_variant 11 B28,B33,B60,B78,B79,B98,C32,C62,C64,C66,C68
Chr8:1083245 G A EMS_canonical_SNV CDS_variant 3 B1,B44,B78
Chr8:1083248 G A EMS_canonical_SNV CDS_variant 2 C20,C48
Chr8:1083283 C T EMS_canonical_SNV CDS_variant 2 C20,C48
Chr8:1083297 G A EMS_canonical_SNV CDS_variant 1 B43
Chr8:1083341 G A EMS_canonical_SNV CDS_variant 1 B130

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057781399.1
339 aa
N
1
170
339
NB-ARC
C
PF00931 NB-ARC 184-330 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781399.1 Pfam PF00931 NB-ARC Domain 184 330 2.7e-10 40.8 NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925416.1
ATATTTAGTATGACAGTTTTCTCATGCAGTTTGCCAGCAGATAGCTCTCTTTAAGAGAGAGAGAGAGAGAGTTTAATTAGAGTTAATCAGCTGCTTTGGGAAGTACTAAGAGCATTTTGAGTTGTACTTTCGCATTGGGTTTCATCCAGGATATGGCACGTTTCCAAGTCGCCCCAACATTCATAGCCCAATCCGTGGTTGAACTCTACCCTGCATGCAAGGATTTGTTCTTGCACGTTAAATCTCAAGGAAGAGACATC...

CDS

1 records

下载 CDS FASTA
LOC130999778
ATGGCACGTTTCCAAGTCGCCCCAACATTCATAGCCCAATCCGTGGTTGAACTCTACCCTGCATGCAAGGATTTGTTCTTGCACGTTAAATCTCAAGGAAGAGACATCAAGAAATTGGAAAACAGATTAAGTGAGCTCATAGCTCTCATGGCGTCGATAATGTCGAGGAAAGACGAAATCGAGCGATGTCTGAGAAATTCAGTCCTCTCAAAGAAGACCAAAGAGTTCGAAATGCTCGTGACAATCATCGCGGATATCGA...

Protein

1 records

下载 Protein FASTA
XP_057781399.1
MARFQVAPTFIAQSVVELYPACKDLFLHVKSQGRDIKKLENRLSELIALMASIMSRKDEIERCLRNSVLSKKTKEFEMLVTIIADIDGKCTKFINKYTKITRRGLCSSADARSIIQELKNLRSRVLTCNFLKLAKLSRDVAKMVAQACVVLERLNPEHMICKRLELNQEKFDVDGDDLAFYNAYVDEVLKHLCENGSKVGILGGSSMGKTIVLRKLFNRLIELKSSFSGSDEGLELDFIIWLEYPQEVEGEAEVVEKLQN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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