Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000164`

染色体: Chr08 坐标: 1106211-1113960 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000164`
名称	SmilChr08G000164
描述	disease resistance protein At4g27190-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1106211 - 1113960 / `+`

ID 对照

NCBI Gene ID	`LOC130999781`
GeneID	`130999781`
locus_tag	`-`
NCBI Name	`LOC130999781`
原始查询	`SmilChr08G000164`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein At4g27190-like
产物	disease resistance protein At4g27190-like
Arabidopsis	`AT4G27190` (AT4G27190) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828827] identity=25.9; qcov=0.916; evalue=7.25e-53; confidence=low
Rice	`Os04g0470500` - identity=25.3; qcov=0.816; evalue=5.05e-35; confidence=low
GO	GO:0005515 (protein binding); GO:0016887 (ATP hydrolysis activity); GO:0043531 (ADP binding)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13855 (LRR_8); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130999781

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781402.1`
2	Cytoplasm	细胞质	0.20000	`XP_057781402.1`
3	Cytosol	细胞质基质	0.20000	`XP_057781402.1`
4	Nucleus	细胞核	0.00000	`XP_057781402.1`
5	Chromosome	染色体	0.00000	`XP_057781402.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1109666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B30,B64,B97,D3
`Chr8:1109682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B30,B64,B97,D3
`Chr8:1109700`	`T`	`TA`	1bp_insertion	stop_gained,frameshift_variant	1	C14
`Chr8:1109700`	`T`	`TA`	1bp_insertion	CDS_variant	1	C14
`Chr8:1109717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B64,B97
`Chr8:1109754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:1109872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr8:1109892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr8:1111808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr8:1111844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C69
`Chr8:1111980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,B67
`Chr8:1112015`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B55,B99,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781402.1

1094 aa

547

1094

NB-ARC

WHD_DRP

LRR_8

LRR_14

LRR_RPS2

PF00931 NB-ARC 186-349 aa PF23559 WHD_DRP 435-492 aa PF13855 LRR_8 534-593 aa PF23598 LRR_14 580-723 aa PF23247 LRR_RPS2 804-909 aa PF23247 LRR_RPS2 861-980 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781402.1`	Pfam	`PF00931`	NB-ARC	Domain	186	349	1.4e-19	71.0	NB-ARC domain
`XP_057781402.1`	Pfam	`PF23559`	WHD_DRP	Domain	435	492	7.1e-07	29.9	Disease resistance protein Winged helix domain
`XP_057781402.1`	Pfam	`PF13855`	LRR_8	Repeat	534	593	2.5e-09	37.5	Leucine rich repeat
`XP_057781402.1`	Pfam	`PF23598`	LRR_14	Repeat	580	723	1.9e-14	53.9	Leucine-rich repeat region
`XP_057781402.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	804	909	2.4e-20	73.8	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781402.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	861	980	2.4e-20	73.8	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925419.1
GTGGGGCGACCTTCAGCCGTTGACTTTATTTTGCATCTCAAAAAATCCTAAACTTTTCATCACTCTTAAAATTGTTTGCTCTTTGTTGAGCTCCGGAGAAAATAGAGCATTTTGCGCGCGGAATCTTAAAGACTTCTTCTCAGTTCTGAGAAATTAAGGATGATTTATGAAGTTCTTAAACTGGTGTTGCAAGGTGTTCTAACAGTGTACACACCTCTCAAAGACGCGGTTTTATGCATGGAGGGCAAGGCAAAATATGT...

CDS

1 records

下载 CDS FASTA

LOC130999781
ATGATTTATGAAGTTCTTAAACTGGTGTTGCAAGGTGTTCTAACAGTGTACACACCTCTCAAAGACGCGGTTTTATGCATGGAGGGCAAGGCAAAATATGTCAAAAAATTAGAAGACAATTTGACAAAAATCACTGCAGAGTTGGCTATCTTTCGATCGAAGAAGAATCAAATTGATGCAACACTGGAAGCAAATTTGTCTAAAGAAAAAAGTGATGAATACGATCTTTTGATCACGCAGTATAAATTTTTCGAAAAAAG...

Protein

1 records

下载 Protein FASTA

XP_057781402.1
MIYEVLKLVLQGVLTVYTPLKDAVLCMEGKAKYVKKLEDNLTKITAELAIFRSKKNQIDATLEANLSKEKSDEYDLLITQYKFFEKRYDEYINKYQRLCQKLPNFEAHDASSANDVMNALQERKPTILTCKFFKLAKLSRKTIELLDGILELTVEMKPENVLRDKKIESVQVKHDDIDLPSSIGYVERILRYLSEDGIRSMGILGAIGVGKTTILITLNNQLKNSSMKMKFEYVIWIDCDQQRNAKDEATQAIQDVIMER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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