Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000167`

染色体: Chr08 坐标: 1149877-1160117 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000167`
名称	SmilChr08G000167
描述	disease resistance protein At4g27190-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1149877 - 1160117 / `+`

ID 对照

NCBI Gene ID	`LOC130999782`
GeneID	`130999782`
locus_tag	`-`
NCBI Name	`LOC130999782`
原始查询	`SmilChr08G000167`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein At4g27190-like
产物	disease resistance protein At4g27190-like
Arabidopsis	`AT4G27190` (AT4G27190) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828827] identity=26.6; qcov=0.849; evalue=1.93e-52; confidence=low
Rice	`Os04g0470500` - identity=30.2; qcov=0.448; evalue=9.13e-38; confidence=low
GO	GO:0005515 (protein binding); GO:0016887 (ATP hydrolysis activity); GO:0043531 (ADP binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00931 (NB-ARC); PF13855 (LRR_8); PF23247 (LRR_RPS2); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130999782

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781403.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781403.1`
3	Nucleus	细胞核	0.00000	`XP_057781403.1`
4	Chromosome	染色体	0.00000	`XP_057781403.1`
5	Centromere	着丝粒	0.00000	`XP_057781403.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1156039`	`A`	`ATG`	2bp_insertion	frameshift_variant	2	B138,C4
`Chr8:1156039`	`A`	`ATG`	2bp_insertion	CDS_variant	2	B138,C4
`Chr8:1156040`	`CCA`	`C`	2bp_deletion	frameshift_variant	2	B138,C4
`Chr8:1156040`	`CCA`	`C`	2bp_deletion	CDS_variant	2	B138,C4
`Chr8:1156045`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C78
`Chr8:1156074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B37,B99,C26,C6
`Chr8:1156176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr8:1156278`	`C`	`T`	EMS_canonical_SNV	stop_gained	18	A13,B108,B109,B118,B119,B135,B16,B42,B43,B45,B46,B48,B84,C14,C23,C73,C83,D6
`Chr8:1156319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,C86
`Chr8:1156333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B20,B84,C25,C42
`Chr8:1156343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,A16,B84,C25,C42
`Chr8:1156385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B24,B62,B77,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781403.1

1065 aa

532

1065

NB-ARC

LRR_8

LRR_14

LRR_RPS2

PF00931 NB-ARC 179-337 aa PF13855 LRR_8 525-583 aa PF23598 LRR_14 570-762 aa PF23247 LRR_RPS2 794-894 aa PF23247 LRR_RPS2 847-961 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781403.1`	Pfam	`PF00931`	NB-ARC	Domain	179	337	1e-20	74.7	NB-ARC domain
`XP_057781403.1`	Pfam	`PF13855`	LRR_8	Repeat	525	583	4.5e-10	39.8	Leucine rich repeat
`XP_057781403.1`	Pfam	`PF23598`	LRR_14	Repeat	570	762	1.2e-15	57.9	Leucine-rich repeat region
`XP_057781403.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	794	894	4.5e-20	72.9	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781403.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	847	961	4.5e-20	72.9	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925420.1
GGACTGTGGAGAGCGACCTTCGCCCATTGACTCAACTTTGCATCTCAAAAAATCCTAAAACTTTTCATCACTTCTGAAAATGCTCTCTCTGTCGAGATCCCCGACAAAATAGGGCATTTTGCGCGCGGAATCTGAAAGATTTCCTTCTTAGTTCTGAGAAGTTAAGGATGGTGTGGCAAATTTTGCAAACGTTGTACCAGCCTGTTAAAGACGGGGTTTCATACATGAAGGGCAAGGCAAAATATGTTAAAAAATTAGAA...

CDS

1 records

下载 CDS FASTA

LOC130999782
ATGGTGTGGCAAATTTTGCAAACGTTGTACCAGCCTGTTAAAGACGGGGTTTCATACATGAAGGGCAAGGCAAAATATGTTAAAAAATTAGAAGACAATTTAACAAAGATCGTTGCAGAGTTGGCTAACTTTTATTCTAGGAAGCGCCAAATTGATCAAACACTTGAAGAAAGTGTGTCTAAAGAAAGAAGTGATCTATACAATGTTAGGATCACGCAGTTTGAAGTCTTGGAGAAAAGATCTTTCGAGTATATCAATAA...

Protein

1 records

下载 Protein FASTA

XP_057781403.1
MVWQILQTLYQPVKDGVSYMKGKAKYVKKLEDNLTKIVAELANFYSRKRQIDQTLEESVSKERSDLYNVRITQFEVLEKRSFEYINNYRRLCHNDLPNFEAHDVSSATDVIKALQERKPTILTRKFFKLAKLSRKVSELLADISDVTDKMKQEDVLRDKKIESVQVKHDDIDLPSSTGYVERILRYLSEDGIRSIGILGAIGVGKTTILKTLNNQLKNSSMKMKFEYVIWIDCDKQRDAKDLIQDEIMGRLKLEKANSAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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