当前解析结果
SmilChr08G000168| 统一新 Gene ID | SmilChr08G000168 |
|---|---|
| 名称 | SmilChr08G000168 |
| 描述 | putative disease resistance RPP13-like protein 1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1160450 - 1165725 / - |
| NCBI Gene ID | LOC130999779 |
|---|---|
| GeneID | 130999779 |
| locus_tag | - |
| NCBI Name | LOC130999779 |
| 原始查询 | SmilChr08G000168 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance RPP13-like protein 1 |
| 产物 | putative disease resistance RPP13-like protein 1 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31; qcov=0.615; evalue=6.65e-111; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=30.9; qcov=0.7; evalue=9.9e-129; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999779 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781400.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057781400.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781400.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781400.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781400.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1160563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr8:1160648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B47,C20,C72,D11 |
Chr8:1160699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B66,B75,C22 |
Chr8:1160701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B66,B75,C22 |
Chr8:1160803 |
TAA |
T |
2bp_deletion | frameshift_variant | 8 | A4,B103,B26,B29,B57,C18,C42,C81 |
Chr8:1160807 |
G |
GTA |
2bp_insertion | frameshift_variant | 8 | A4,B103,B26,B29,B57,C18,C42,C81 |
Chr8:1160829 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr8:1160840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr8:1160846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B62,C14,C7 |
Chr8:1160869 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B42,B43 |
Chr8:1160869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr8:1160888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781400.1PF18052
Rx_N 9-95 aa
PF00931
NB-ARC 179-346 aa
PF23559
WHD_DRP 427-492 aa
PF23598
LRR_14 527-825 aa
PF25019
LRR_R13L1-DRL21 657-792 aa
PF23598
LRR_14 1220-1534 aa
PF23247
LRR_RPS2 1553-1638 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781400.1 |
Pfam | PF18052 |
Rx_N | Domain | 9 | 95 | 1.6e-23 | 83.3 | Rx N-terminal domain |
XP_057781400.1 |
Pfam | PF00931 |
NB-ARC | Domain | 179 | 346 | 5.5e-32 | 111.4 | NB-ARC domain |
XP_057781400.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 427 | 492 | 2.3e-18 | 66.7 | Disease resistance protein Winged helix domain |
XP_057781400.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 527 | 825 | 8.6e-48 | 163.6 | Leucine-rich repeat region |
XP_057781400.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 657 | 792 | 5.1e-40 | 137.0 | R13L1/DRL21 LRRs |
XP_057781400.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 1220 | 1534 | 8.6e-48 | 163.6 | Leucine-rich repeat region |
XP_057781400.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 1553 | 1638 | 5.9e-28 | 98.6 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。