当前解析结果
SmilChr08G000170| 统一新 Gene ID | SmilChr08G000170 |
|---|---|
| 名称 | SmilChr08G000170 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1173714 - 1175406 / - |
| NCBI Gene ID | LOC130999784 |
|---|---|
| GeneID | 130999784 |
| locus_tag | - |
| NCBI Name | LOC130999784 |
| 原始查询 | SmilChr08G000170 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT3G47090 (AT3G47090)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823862] identity=47.2; qcov=1.03; evalue=1.82e-93; confidence=high |
| Rice | Os02g0215900 (OsGIRL1)- identity=50.6; qcov=1.04; evalue=5.47e-109; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999784 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781406.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057781406.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781406.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781406.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781406.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1173928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,A8,B83,C59 |
Chr8:1173949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr8:1173994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B53,B67 |
Chr8:1174007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr8:1174012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,A24,B28,C75 |
Chr8:1174013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr8:1174163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B65 |
Chr8:1174189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,A3,A8,B124,B83 |
Chr8:1174219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B8,C11,C69 |
Chr8:1174838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B3 |
Chr8:1174856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr8:1174989 |
T |
TTC |
2bp_insertion | frameshift_variant | 2 | B20,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781406.1PF00069
Pkinase 16-236 aa
PF07714
PK_Tyr_Ser-Thr 18-231 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781406.1 |
Pfam | PF00069 |
Pkinase | Domain | 16 | 236 | 1.3e-35 | 123.8 | Protein kinase domain |
XP_057781406.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 18 | 231 | 9.3e-39 | 134.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。