当前解析结果
SmilChr08G000176| 统一新 Gene ID | SmilChr08G000176 |
|---|---|
| 名称 | SmilChr08G000176 |
| 描述 | endochitinase EP3-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1201750 - 1204112 / + |
| NCBI Gene ID | LOC130997020 |
|---|---|
| GeneID | 130997020 |
| locus_tag | - |
| NCBI Name | LOC130997020 |
| 原始查询 | SmilChr08G000176 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | endochitinase EP3-like |
| 产物 | endochitinase EP3-like |
| Arabidopsis | AT3G54420 (EP3)homolog of carrot EP3-3 chitinase [Source:NCBI gene (formerly Entrezgene);Acc:824608] identity=43.5; qcov=1.24; evalue=2.92e-68; confidence=medium |
| Rice | Os04g0494100 (Cht5)- identity=44.9; qcov=1.2; evalue=1.65e-65; confidence=medium |
| GO | GO:0004568 (chitinase activity); GO:0005975 (carbohydrate metabolic process); GO:0006032 (chitin catabolic process); GO:0008061 (chitin binding); GO:0016998 (cell wall macromolecule catabolic process) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00182 (Glyco_hydro_19); PF00187 (Chitin_bind_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997020 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057778282.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778282.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778282.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778282.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778282.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1201810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,C5,D11 |
Chr8:1201828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,C84 |
Chr8:1201887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr8:1201936 |
GAC |
G |
2bp_deletion | frameshift_variant | 2 | C3,C50 |
Chr8:1201936 |
GAC |
G |
2bp_deletion | CDS_variant | 2 | C3,C50 |
Chr8:1201982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C57 |
Chr8:1201994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B16,C19 |
Chr8:1202019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,C65,C78 |
Chr8:1202070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:1202096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,B99,C26 |
Chr8:1202106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,C50 |
Chr8:1203575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B101,B15,C34,C41,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778282.1PF00187
Chitin_bind_1 26-56 aa
PF00182
Glyco_hydro_19 64-126 aa
PF00182
Glyco_hydro_19 170-219 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778282.1 |
Pfam | PF00187 |
Chitin_bind_1 | Domain | 26 | 56 | 8e-08 | 33.1 | Chitin recognition protein |
XP_057778282.1 |
Pfam | PF00182 |
Glyco_hydro_19 | Domain | 64 | 126 | 7e-22 | 79.1 | Chitinase class I |
XP_057778282.1 |
Pfam | PF00182 |
Glyco_hydro_19 | Domain | 170 | 219 | 7e-22 | 79.1 | Chitinase class I |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。