当前解析结果
SmilChr08G000181| 统一新 Gene ID | SmilChr08G000181 |
|---|---|
| 名称 | SmilChr08G000181 |
| 描述 | endochitinase A-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1237352 - 1244110 / + |
| NCBI Gene ID | LOC130999793 |
|---|---|
| GeneID | 130999793 |
| locus_tag | - |
| NCBI Name | LOC130999793 |
| 原始查询 | SmilChr08G000181 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | endochitinase A-like |
| 产物 | endochitinase A-like |
| Arabidopsis | AT3G54420 (EP3)homolog of carrot EP3-3 chitinase [Source:NCBI gene (formerly Entrezgene);Acc:824608] identity=58.9; qcov=1.03; evalue=2.08e-111; confidence=high |
| Rice | Os04g0494100 (Cht5)- identity=63.6; qcov=1.01; evalue=8.62e-113; confidence=high |
| GO | GO:0004568 (chitinase activity); GO:0005975 (carbohydrate metabolic process); GO:0006032 (chitin catabolic process); GO:0008061 (chitin binding); GO:0016998 (cell wall macromolecule catabolic process) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00182 (Glyco_hydro_19); PF00187 (Chitin_bind_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999793 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057781420.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057781420.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057781420.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781420.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781420.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1237461 |
C |
CG |
1bp_insertion | frameshift_variant | 6 | A14,A7,B35,B90,B92,C71 |
Chr8:1237463 |
AC |
A |
1bp_deletion | frameshift_variant | 6 | A14,A7,B35,B90,B92,C71 |
Chr8:1237470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,C20,C8 |
Chr8:1237473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C5 |
Chr8:1237483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,C9 |
Chr8:1237506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B26,B29,B72,B81 |
Chr8:1237525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C61,C79 |
Chr8:1237528 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B114 |
Chr8:1237528 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B114 |
Chr8:1242860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr8:1242929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B128,C30 |
Chr8:1242962 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781420.1PF00187
Chitin_bind_1 25-56 aa
PF00182
Glyco_hydro_19 68-207 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781420.1 |
Pfam | PF00187 |
Chitin_bind_1 | Domain | 25 | 56 | 8.5e-09 | 36.2 | Chitin recognition protein |
XP_057781420.1 |
Pfam | PF00182 |
Glyco_hydro_19 | Domain | 68 | 207 | 3.8e-51 | 174.8 | Chitinase class I |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。