当前解析结果
SmilChr08G000189| 统一新 Gene ID | SmilChr08G000189 |
|---|---|
| 名称 | SmilChr08G000189 |
| 描述 | glutathione transferase GST 23-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1273362 - 1274964 / + |
| NCBI Gene ID | LOC130999796 |
|---|---|
| GeneID | 130999796 |
| locus_tag | - |
| NCBI Name | LOC130999796 |
| 原始查询 | SmilChr08G000189 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione transferase GST 23-like |
| 产物 | glutathione transferase GST 23-like |
| Arabidopsis | AT3G09270 (GSTU8)glutathione S-transferase TAU 8 [Source:NCBI gene (formerly Entrezgene);Acc:820083] identity=44.8; qcov=0.934; evalue=1.33e-59; confidence=medium |
| Rice | Os09g0467200 (OsGSTU17)- identity=44.8; qcov=0.965; evalue=2.17e-62; confidence=medium |
| GO | GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm); GO:0006749 (glutathione metabolic process) |
| KEGG | smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00043 (GST_C); PF02798 (GST_N); PF13409 (GST_N_2); PF13417 (GST_N_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999796 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057781424.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057781424.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781424.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781424.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781424.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1273482 |
T |
TTA |
2bp_insertion | frameshift_variant | 16 | A15,A23,A8,B1,B106,B114,B13,B14,B38,B51,B83,C10,C23,C57,C75,C77 |
Chr8:1273567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,C47,C52,C59 |
Chr8:1273590 |
A |
AC |
1bp_insertion | frameshift_variant | 6 | A11,A3,B115,B124,B85,C57 |
Chr8:1273617 |
T |
TA |
1bp_insertion | frameshift_variant | 6 | A11,A3,B115,B124,B85,C57 |
Chr8:1273634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr8:1273643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:1273648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B87,C27,C7,D9 |
Chr8:1273682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B113,C71 |
Chr8:1273696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr8:1273703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr8:1273714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B34,C82 |
Chr8:1273717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781424.1PF02798
GST_N 8-79 aa
PF13417
GST_N_3 10-82 aa
PF13409
GST_N_2 16-80 aa
PF00043
GST_C 133-200 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781424.1 |
Pfam | PF02798 |
GST_N | Domain | 8 | 79 | 1.9e-16 | 60.9 | Glutathione S-transferase, N-terminal domain |
XP_057781424.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 10 | 82 | 2.2e-15 | 57.4 | Glutathione S-transferase, N-terminal domain |
XP_057781424.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 16 | 80 | 1.7e-16 | 61.3 | Glutathione S-transferase, N-terminal domain |
XP_057781424.1 |
Pfam | PF00043 |
GST_C | Domain | 133 | 200 | 0.00017 | 22.5 | Glutathione S-transferase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。