Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000196`

染色体: Chr08 坐标: 1311293-1316435 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000196`
名称	SmilChr08G000196
描述	putative disease resistance protein RGA3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1311293 - 1316435 / `-`

ID 对照

NCBI Gene ID	`LOC130999803`
GeneID	`130999803`
locus_tag	`-`
NCBI Name	`LOC130999803`
原始查询	`SmilChr08G000196`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA3
产物	putative disease resistance protein RGA3
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=32.3; qcov=0.962; evalue=3.32e-119; confidence=low
Rice	`Os05g0492200` (YR1) - identity=33.5; qcov=0.951; evalue=3.02e-124; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999803

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781432.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781430.1`
3	Nucleus	细胞核	0.00000	`XP_057781430.1`
4	Chromosome	染色体	0.00000	`XP_057781430.1`
5	Centromere	着丝粒	0.00000	`XP_057781430.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1312898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr8:1313022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C10,C80
`Chr8:1313085`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C10
`Chr8:1313085`	`T`	`TC`	1bp_insertion	CDS_variant	1	C10
`Chr8:1313088`	`CA`	`C`	1bp_deletion	frameshift_variant	1	C10
`Chr8:1313088`	`CA`	`C`	1bp_deletion	CDS_variant	1	C10
`Chr8:1313697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr8:1313743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr8:1313769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr8:1313898`	`GT`	`G`	1bp_deletion	frameshift_variant	1	C63
`Chr8:1313898`	`GT`	`G`	1bp_deletion	CDS_variant	1	C63
`Chr8:1313910`	`T`	`TC`	1bp_insertion	frameshift_variant	4	A23,A8,C13,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781430.1

1025 aa

512

1025

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 26-114 aa PF00931 NB-ARC 201-366 aa PF13401 AAA_22 216-302 aa PF23559 WHD_DRP 451-523 aa PF23598 LRR_14 566-866 aa PF25019 LRR_R13L1-DRL21 698-833 aa

XP_057781431.1

1025 aa

512

1025

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 26-114 aa PF00931 NB-ARC 201-366 aa PF13401 AAA_22 216-302 aa PF23559 WHD_DRP 451-523 aa PF23598 LRR_14 566-866 aa PF25019 LRR_R13L1-DRL21 698-833 aa

XP_057781432.1

1008 aa

504

1008

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-97 aa PF00931 NB-ARC 184-349 aa PF13401 AAA_22 199-285 aa PF23559 WHD_DRP 434-506 aa PF23598 LRR_14 549-881 aa PF25019 LRR_R13L1-DRL21 681-816 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781430.1`	Pfam	`PF18052`	Rx_N	Domain	26	114	1.5e-20	73.8	Rx N-terminal domain
`XP_057781430.1`	Pfam	`PF00931`	NB-ARC	Domain	201	366	3.2e-35	122.0	NB-ARC domain
`XP_057781430.1`	Pfam	`PF13401`	AAA_22	Domain	216	302	1e-07	33.0	AAA domain
`XP_057781430.1`	Pfam	`PF23559`	WHD_DRP	Domain	451	523	2.5e-22	79.4	Disease resistance protein Winged helix domain
`XP_057781430.1`	Pfam	`PF23598`	LRR_14	Repeat	566	866	3.5e-30	105.7	Leucine-rich repeat region
`XP_057781430.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	698	833	7.4e-37	126.8	R13L1/DRL21 LRRs
`XP_057781431.1`	Pfam	`PF18052`	Rx_N	Domain	26	114	1.5e-20	73.8	Rx N-terminal domain
`XP_057781431.1`	Pfam	`PF00931`	NB-ARC	Domain	201	366	3.2e-35	122.0	NB-ARC domain
`XP_057781431.1`	Pfam	`PF13401`	AAA_22	Domain	216	302	1e-07	33.0	AAA domain
`XP_057781431.1`	Pfam	`PF23559`	WHD_DRP	Domain	451	523	2.5e-22	79.4	Disease resistance protein Winged helix domain
`XP_057781431.1`	Pfam	`PF23598`	LRR_14	Repeat	566	866	3.5e-30	105.7	Leucine-rich repeat region
`XP_057781431.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	698	833	7.4e-37	126.8	R13L1/DRL21 LRRs
`XP_057781432.1`	Pfam	`PF18052`	Rx_N	Domain	9	97	1.5e-20	73.8	Rx N-terminal domain
`XP_057781432.1`	Pfam	`PF00931`	NB-ARC	Domain	184	349	3.2e-35	122.0	NB-ARC domain
`XP_057781432.1`	Pfam	`PF13401`	AAA_22	Domain	199	285	1e-07	33.0	AAA domain
`XP_057781432.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	506	2.4e-22	79.4	Disease resistance protein Winged helix domain
`XP_057781432.1`	Pfam	`PF23598`	LRR_14	Repeat	549	881	2.5e-29	102.8	Leucine-rich repeat region
`XP_057781432.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	681	816	3.1e-37	128.0	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925449.1
AGGCTGTAAACTCTTTTTTTTGAGGGGAGAAAGGCTGTAAACTCTTGAGCTTGCATCACTCATCCAATTCTGCTCCTTAATCCTCTCTCTCTCTCACTGAATTTCTCTGTCTCTCTCTCTAAGTTATCAGCACAAACAATGGAAGGAGAAGCTGCTGCCGCCGTCCTTCAAACTCTAGTTCAAAACCTCATCGACCTTTGCAAGAAAGAGATCTCTCAGATCCGAGATCTCGACAAAAATGCAGCAAAGCTAGCTGGGAA...

XM_057925447.1
ATGAATTTCAATTCTGCTTGTTGATTGTGTGTAGTGAAAATTTGAGATTTTTTTTCTTCTTTTTTTTGGTGTTTCCTTTTGTACTAATTATCATGTTTGGCCATTCTCTTATGAGATTTGATACTTTGAGTTTTGCTCATATATTTTGATGATAGAGTTTTCTTAGTTCTTACAATAACAAATTTTTATTTGGATTACGCACTATGTTGTATACTCATTATGTCCACGAAAATCATAGTGTTGTTTGGGAGCAATGGGTT...

CDS

3 records

下载 CDS FASTA

LOC130999803
ATGAGTATAATCAATTTCTCTCTTTCTCTCTCCAAGTTATCAGCACAAACAATGGAAGGAGAAGCTGCTGCCGCCGTCCTTCAAACTCTAGTTCAAAACCTCATCGACCTTTGCAAGAAAGAGATCTCTCAGATCCGAGATCTCGACAAAAATGCAGCAAAGCTAGCTGGGAATCTCGACATGATCAAAAATTTCTTGAATGATGCCGAGACGCGTACCATCACCAGCGGTGCTATCAAGAACTGGCTGAAGAAGCTTGA...

Protein

3 records

下载 Protein FASTA

XP_057781430.1
MSIINFSLSLSKLSAQTMEGEAAAAVLQTLVQNLIDLCKKEISQIRDLDKNAAKLAGNLDMIKNFLNDAETRTITSGAIKNWLKKLEDMAFDADNVLDEINYNILSKQIKPTEPEEEKVPSCFSRLSCFSCCKNLSRSRNMALTIKEINENLESINKEAANLGLVEKLANEPTFVIASSETDSFSDDPIFIGRDDVKLEIVEKLTNNITTDERKVSIISIVGMGGLGKTTLTRKVFNHLKDETRFGSHIWVHVSPHFDAI...

XP_057781431.1
MSIINFSLSLSKLSAQTMEGEAAAAVLQTLVQNLIDLCKKEISQIRDLDKNAAKLAGNLDMIKNFLNDAETRTITSGAIKNWLKKLEDMAFDADNVLDEINYNILSKQIKPTEPEEEKVPSCFSRLSCFSCCKNLSRSRNMALTIKEINENLESINKEAANLGLVEKLANEPTFVIASSETDSFSDDPIFIGRDDVKLEIVEKLTNNITTDERKVSIISIVGMGGLGKTTLTRKVFNHLKDETRFGSHIWVHVSPHFDAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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