当前解析结果
SmilChr08G000209| 统一新 Gene ID | SmilChr08G000209 |
|---|---|
| 名称 | SmilChr08G000209 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1420574 - 1429978 / - |
| NCBI Gene ID | LOC130999816 |
|---|---|
| GeneID | 130999816 |
| locus_tag | - |
| NCBI Name | LOC130999816 |
| 原始查询 | SmilChr08G000209 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=29.4; qcov=1.04; evalue=8.69e-102; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=32.5; qcov=1.1; evalue=2.8e-114; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999816 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781461.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057781461.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781461.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781461.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781461.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1423732 |
TCA |
T |
2bp_deletion | frameshift_variant | 3 | B54,B66,B93 |
Chr8:1423732 |
TCA |
T |
2bp_deletion | CDS_variant | 3 | B54,B66,B93 |
Chr8:1423734 |
AC |
* |
1bp_deletion | CDS_variant | 3 | B54,B66,B93 |
Chr8:1423755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C31,D6 |
Chr8:1423774 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B53 |
Chr8:1423792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr8:1423818 |
TCA |
T |
2bp_deletion | frameshift_variant | 31 | B122,B125,B129,B136,B2,B23,B25,B31,B37,B40,B67,B71,B73,B75,B78,B99,C1,C11,C17,C31,C36,C40,C49,C55,C59,C60,C61,C73,C86,C87,D11 |
Chr8:1423837 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B123 |
Chr8:1423837 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B123 |
Chr8:1423840 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B129,C72 |
Chr8:1423840 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B129,C72 |
Chr8:1423849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781461.1PF18052
Rx_N 9-95 aa
PF00931
NB-ARC 194-359 aa
PF23559
WHD_DRP 440-508 aa
PF23598
LRR_14 570-843 aa
PF25019
LRR_R13L1-DRL21 653-788 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781461.1 |
Pfam | PF18052 |
Rx_N | Domain | 9 | 95 | 1.3e-21 | 77.1 | Rx N-terminal domain |
XP_057781461.1 |
Pfam | PF00931 |
NB-ARC | Domain | 194 | 359 | 6.4e-34 | 117.7 | NB-ARC domain |
XP_057781461.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 440 | 508 | 2.5e-20 | 73.0 | Disease resistance protein Winged helix domain |
XP_057781461.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 570 | 843 | 4.8e-26 | 92.1 | Leucine-rich repeat region |
XP_057781461.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 653 | 788 | 9.8e-34 | 116.7 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。