当前解析结果
SmilChr08G000213| 统一新 Gene ID | SmilChr08G000213 |
|---|---|
| 名称 | SmilChr08G000213 |
| 描述 | putative E3 ubiquitin-protein ligase XBAT34 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1446831 - 1452062 / + |
| NCBI Gene ID | LOC130999828 |
|---|---|
| GeneID | 130999828 |
| locus_tag | - |
| NCBI Name | LOC130999828 |
| 原始查询 | SmilChr08G000213 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative E3 ubiquitin-protein ligase XBAT34 |
| 产物 | putative E3 ubiquitin-protein ligase XBAT34 |
| Arabidopsis | AT3G23280 (XBAT35)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:821907] identity=50.5; qcov=1.05; evalue=2.86e-155; confidence=high |
| Rice | Os07g0446100 (XBOS34)- identity=43.5; qcov=1.17; evalue=7.99e-132; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4); PF13920 (zf-C3HC4_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999828 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057781478.1 |
| 2 | Endosome | 内体 | 0.40000 | XP_057781478.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057781478.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781478.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781478.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1447209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,C16,C33,C57 |
Chr8:1447254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C16,C53 |
Chr8:1448186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr8:1448764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B29,B53,B67 |
Chr8:1448769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B115,B48,B76 |
Chr8:1448791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C8,C85 |
Chr8:1448934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B74,B81,C36 |
Chr8:1448960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,C29 |
Chr8:1449150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:1450357 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr8:1450384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B35 |
Chr8:1450490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781478.1PF00023
Ank 40-69 aa
PF12796
Ank_2 76-128 aa
PF00023
Ank 78-106 aa
PF13637
Ank_4 80-126 aa
PF13920
zf-C3HC4_3 405-452 aa
XP_057781479.1PF00023
Ank 40-69 aa
PF12796
Ank_2 76-128 aa
PF00023
Ank 78-106 aa
PF13637
Ank_4 80-126 aa
PF13920
zf-C3HC4_3 403-450 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781478.1 |
Pfam | PF00023 |
Ank | Repeat | 40 | 69 | 2e-14 | 53.6 | Ankyrin repeat |
XP_057781478.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 76 | 128 | 1.3e-17 | 64.8 | Ankyrin repeats (3 copies) |
XP_057781478.1 |
Pfam | PF00023 |
Ank | Repeat | 78 | 106 | 2e-14 | 53.6 | Ankyrin repeat |
XP_057781478.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 80 | 126 | 3.1e-13 | 50.3 | Ankyrin repeats (many copies) |
XP_057781478.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 405 | 452 | 2.6e-12 | 47.0 | Zinc finger, C3HC4 type (RING finger) |
XP_057781479.1 |
Pfam | PF00023 |
Ank | Repeat | 40 | 69 | 2e-14 | 53.6 | Ankyrin repeat |
XP_057781479.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 76 | 128 | 1.3e-17 | 64.8 | Ankyrin repeats (3 copies) |
XP_057781479.1 |
Pfam | PF00023 |
Ank | Repeat | 78 | 106 | 2e-14 | 53.6 | Ankyrin repeat |
XP_057781479.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 80 | 126 | 3.1e-13 | 50.3 | Ankyrin repeats (many copies) |
XP_057781479.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 403 | 450 | 2.6e-12 | 47.0 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。