当前解析结果
SmilChr08G000214| 统一新 Gene ID | SmilChr08G000214 |
|---|---|
| 名称 | SmilChr08G000214 |
| 描述 | phosphate transporter PHO1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1451922 - 1462952 / - |
| NCBI Gene ID | LOC130999819 |
|---|---|
| GeneID | 130999819 |
| locus_tag | - |
| NCBI Name | LOC130999819 |
| 原始查询 | SmilChr08G000214 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphate transporter PHO1-like |
| 产物 | phosphate transporter PHO1-like |
| Arabidopsis | AT3G23430 (PHO1)phosphate 1 [Source:NCBI gene (formerly Entrezgene);Acc:821924] identity=66.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0809800 (Pho1)- identity=50.8; qcov=1.07; evalue=0; confidence=high |
| GO | GO:0000822 (inositol hexakisphosphate binding); GO:0005737 (cytoplasm); GO:0005794 (Golgi apparatus); GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0006817 (phosphate ion transport); GO:0015114 (GO:0015114); GO:0016036 (cellular response to phosphate starvation) |
| KEGG | - |
| Pfam | PF03105 (SPX); PF03124 (EXS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999819 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781464.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057781464.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781464.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781464.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781464.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1452560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C31 |
Chr8:1452575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:1452584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:1452608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr8:1452756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B26,B72 |
Chr8:1452801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B117,B18 |
Chr8:1452808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B20,B3,C2 |
Chr8:1452809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C31 |
Chr8:1452833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C8,C85 |
Chr8:1452840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B26,B72 |
Chr8:1452870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:1452884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781464.1PF03105
SPX 2-337 aa
PF03124
EXS 427-760 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781464.1 |
Pfam | PF03105 |
SPX | Domain | 2 | 337 | 1.2e-71 | 243.2 | SPX domain |
XP_057781464.1 |
Pfam | PF03124 |
EXS | Family | 427 | 760 | 8.8e-96 | 321.8 | EXS family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。