Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000215`

染色体: Chr08 坐标: 1471203-1474705 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000215`
名称	SmilChr08G000215
描述	transcription factor GTE6-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1471203 - 1474705 / `-`

ID 对照

NCBI Gene ID	`LOC130999830`
GeneID	`130999830`
locus_tag	`-`
NCBI Name	`LOC130999830`
原始查询	`SmilChr08G000215`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor GTE6-like
产物	transcription factor GTE6-like
Arabidopsis	`AT2G34900` (IMB1) Transcription factor GTE6 [Source:NCBI gene (formerly Entrezgene);Acc:818055] identity=48.9; qcov=0.966; evalue=6.25e-117; confidence=high
Rice	`Os06g0138000` - identity=46.1; qcov=0.34; evalue=1.03e-35; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00439 (Bromodomain); PF17035 (BET)
InterPro	-
eggNOG	-
NR	GeneID:130999830

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781485.1`
2	Chromosome	染色体	0.00000	`XP_057781485.1`
3	Centromere	着丝粒	0.00000	`XP_057781485.1`
4	Chromatin	染色质	0.00000	`XP_057781485.1`
5	Telomere	端粒	0.00000	`XP_057781485.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1471369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B132,C31
`Chr8:1471378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr8:1471384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr8:1471411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:1471417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B20,B25,B85,C31
`Chr8:1471441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B24,B76,C52
`Chr8:1471470`	`TG`	`T`	1bp_deletion	frameshift_variant	3	B44,C26,C34
`Chr8:1471470`	`TG`	`T`	1bp_deletion	CDS_variant	3	B44,C26,C34
`Chr8:1471472`	`TTC`	`T`	2bp_deletion	frameshift_variant	3	B44,C26,C34
`Chr8:1471472`	`TTC`	`T`	2bp_deletion	CDS_variant	3	B44,C26,C34
`Chr8:1471501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:1471516`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B11,B18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781485.1

377 aa

188

377

Bromodomain

BET

PF00439 Bromodomain 106-191 aa PF17035 BET 265-328 aa

XP_057781486.1

377 aa

188

377

Bromodomain

BET

PF00439 Bromodomain 106-191 aa PF17035 BET 265-328 aa

XP_057781487.1

377 aa

188

377

Bromodomain

BET

PF00439 Bromodomain 106-191 aa PF17035 BET 265-328 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781485.1`	Pfam	`PF00439`	Bromodomain	Domain	106	191	3e-18	66.3	Bromodomain
`XP_057781485.1`	Pfam	`PF17035`	BET	Domain	265	328	6.4e-20	71.7	Bromodomain extra-terminal - transcription regulation
`XP_057781486.1`	Pfam	`PF00439`	Bromodomain	Domain	106	191	3e-18	66.3	Bromodomain
`XP_057781486.1`	Pfam	`PF17035`	BET	Domain	265	328	6.4e-20	71.7	Bromodomain extra-terminal - transcription regulation
`XP_057781487.1`	Pfam	`PF00439`	Bromodomain	Domain	106	191	3e-18	66.3	Bromodomain
`XP_057781487.1`	Pfam	`PF17035`	BET	Domain	265	328	6.4e-20	71.7	Bromodomain extra-terminal - transcription regulation

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925503.1
TCCTTTCTGTTAGCAAACCAAAAGTGTACAAGTTGAATAAGCACATGAGCAAAAGGTACAAGTAAGGAAAGCGCATCCTCTTTACTAAAATTGCTGTAGGGGGTTTTTGCTTCTACTTCTTCAATCAGCTAAACCCCAGCTTGAAAGGTGATGGGGGTTGTTGACGCGCCTGCGGTTGCGCCGCCGGAAACGGCGAGAGATATGTCTCAAGCGGAGAGCTTGAACCAAAGCGTGGAGGAGATGTCCATAAAAGTTGACCA...

XM_057925502.1
TGTTAGCAAACCAAAAGTGTACAAGTTGAATAAGCACATGAGCAAAAGCTTGAAAGGTGATGGGGGTTGTTGACGCGCCTGCGGTTGCGCCGCCGGAAACGGCGAGAGATATGTCTCAAGCGGAGAGCTTGAACCAAAGCGTGGAGGAGATGTCCATAAAAGTTGACCAGCTGGAGCAGAAACTCAATGAGGTCGAACAATTCTACTCTAATTCAAATACAAAACACCCAAACACTCCAAAAGGTGGTTCGTTAGGGAAG...

CDS

3 records

下载 CDS FASTA

LOC130999830
ATGGGGGTTGTTGACGCGCCTGCGGTTGCGCCGCCGGAAACGGCGAGAGATATGTCTCAAGCGGAGAGCTTGAACCAAAGCGTGGAGGAGATGTCCATAAAAGTTGACCAGCTGGAGCAGAAACTCAATGAGGTCGAACAATTCTACTCTAATTCAAATACAAAACACCCAAACACTCCAAAAGGTGGTTCGTTAGGGAAGGACAAAGAAAAGGAGAAGTTCCCTTTGAGCAGCTTTAAGAAGAAGCAGCAAGATATAGC...

Protein

3 records

下载 Protein FASTA

XP_057781485.1
MGVVDAPAVAPPETARDMSQAESLNQSVEEMSIKVDQLEQKLNEVEQFYSNSNTKHPNTPKGGSLGKDKEKEKFPLSSFKKKQQDIASREAAAAQRMQELMRQFGTILRQLTQHQWAGPFLQPVDVVGLGLHDYYEVIEKPMDFSTIKCRMEAKDGTGYKNVREICADVRLIFKNAMKYNEERDDVHVMAKTLLDKFETKWLQLLPKVDEEEERRKEEEAEMQLDMQLAQEAAHAKMARELSFDLDEVDTHLEELRDLVL...

XP_057781486.1
MGVVDAPAVAPPETARDMSQAESLNQSVEEMSIKVDQLEQKLNEVEQFYSNSNTKHPNTPKGGSLGKDKEKEKFPLSSFKKKQQDIASREAAAAQRMQELMRQFGTILRQLTQHQWAGPFLQPVDVVGLGLHDYYEVIEKPMDFSTIKCRMEAKDGTGYKNVREICADVRLIFKNAMKYNEERDDVHVMAKTLLDKFETKWLQLLPKVDEEEERRKEEEAEMQLDMQLAQEAAHAKMARELSFDLDEVDTHLEELRDLVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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