Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000225`

染色体: Chr08 坐标: 1517468-1587894 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000225`
名称	SmilChr08G000225
描述	putative disease resistance protein RGA3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1517468 - 1587894 / `-`

ID 对照

NCBI Gene ID	`LOC130999812`
GeneID	`130999812`
locus_tag	`-`
NCBI Name	`LOC130999812`
原始查询	`SmilChr08G000225`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA3
产物	putative disease resistance protein RGA3
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31.6; qcov=0.953; evalue=8.65e-125; confidence=low
Rice	`Os05g0492200` (YR1) - identity=33.3; qcov=0.871; evalue=9.03e-125; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999812

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057781445.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781445.1`
3	Nucleus	细胞核	0.00000	`XP_057781445.1`
4	Chromosome	染色体	0.00000	`XP_057781445.1`
5	Centromere	着丝粒	0.00000	`XP_057781445.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1568914`	`TCA`	`T`	2bp_deletion	frameshift_variant	12	A10,A7,B42,B48,B51,B76,B9,B96,C27,C35,C63,C71
`Chr8:1568919`	`GC`	`G`	1bp_deletion	frameshift_variant	20	B10,B110,B27,B29,B43,B51,B65,B77,B78,B79,B97,C13,C19,C22,C37,C42,C56,C59,C70,D1
`Chr8:1568932`	`G`	`GAA`	2bp_insertion	frameshift_variant	31	A10,A16,B113,B12,B126,B132,B139,B16,B24,B30,B39,B40,B47,B52,B60,B63,B8,B81,C10,C25,C31,C32,C45,C5,C68,C71,C73,C75,C85,D2,D6
`Chr8:1568935`	`TCC`	`T`	2bp_deletion	frameshift_variant	31	A10,A16,B113,B12,B126,B132,B139,B16,B24,B30,B39,B40,B47,B52,B60,B63,B8,B81,C10,C25,C31,C32,C45,C5,C68,C71,C73,C75,C85,D2,D6
`Chr8:1568938`	`A`	`AC`	1bp_insertion	frameshift_variant	1	B11
`Chr8:1568938`	`A`	`AC`	1bp_insertion	CDS_variant	1	B11
`Chr8:1568965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B123,B25,C42,C77
`Chr8:1568978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B133,B27,B43,B56
`Chr8:1568999`	`A`	`AT`	1bp_insertion	frameshift_variant	13	B117,B25,B31,B72,B88,C10,C11,C42,C49,C67,C77,C84,C86
`Chr8:1569000`	`T`	`TA`	1bp_insertion	frameshift_variant	8	B113,B18,B65,B77,C13,C23,C38,C43
`Chr8:1569012`	`T`	`TGC`	2bp_insertion	frameshift_variant	6	B18,B65,B77,C13,C38,C43
`Chr8:1569044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781445.1

1058 aa

529

1058

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 8-96 aa PF00931 NB-ARC 184-348 aa PF23559 WHD_DRP 433-500 aa PF23598 LRR_14 533-828 aa PF25019 LRR_R13L1-DRL21 661-796 aa

XP_057781446.1

1058 aa

529

1058

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 8-96 aa PF00931 NB-ARC 184-348 aa PF23559 WHD_DRP 433-500 aa PF23598 LRR_14 533-828 aa PF25019 LRR_R13L1-DRL21 661-796 aa

XP_057781448.1

1058 aa

529

1058

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 8-96 aa PF00931 NB-ARC 184-348 aa PF23559 WHD_DRP 433-500 aa PF23598 LRR_14 533-828 aa PF25019 LRR_R13L1-DRL21 661-796 aa

XP_057781449.1

1058 aa

529

1058

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 8-96 aa PF00931 NB-ARC 184-348 aa PF23559 WHD_DRP 433-500 aa PF23598 LRR_14 533-828 aa PF25019 LRR_R13L1-DRL21 661-796 aa

XP_057781450.1

1058 aa

529

1058

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 8-96 aa PF00931 NB-ARC 184-348 aa PF23559 WHD_DRP 433-500 aa PF23598 LRR_14 533-828 aa PF25019 LRR_R13L1-DRL21 661-796 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781445.1`	Pfam	`PF18052`	Rx_N	Domain	8	96	2.4e-22	79.6	Rx N-terminal domain
`XP_057781445.1`	Pfam	`PF00931`	NB-ARC	Domain	184	348	2.6e-35	122.3	NB-ARC domain
`XP_057781445.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	500	5.2e-22	78.4	Disease resistance protein Winged helix domain
`XP_057781445.1`	Pfam	`PF23598`	LRR_14	Repeat	533	828	1.1e-34	120.5	Leucine-rich repeat region
`XP_057781445.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	661	796	7.7e-40	136.4	R13L1/DRL21 LRRs
`XP_057781446.1`	Pfam	`PF18052`	Rx_N	Domain	8	96	2.4e-22	79.6	Rx N-terminal domain
`XP_057781446.1`	Pfam	`PF00931`	NB-ARC	Domain	184	348	2.6e-35	122.3	NB-ARC domain
`XP_057781446.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	500	5.2e-22	78.4	Disease resistance protein Winged helix domain
`XP_057781446.1`	Pfam	`PF23598`	LRR_14	Repeat	533	828	1.1e-34	120.5	Leucine-rich repeat region
`XP_057781446.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	661	796	7.7e-40	136.4	R13L1/DRL21 LRRs
`XP_057781448.1`	Pfam	`PF18052`	Rx_N	Domain	8	96	2.4e-22	79.6	Rx N-terminal domain
`XP_057781448.1`	Pfam	`PF00931`	NB-ARC	Domain	184	348	2.6e-35	122.3	NB-ARC domain
`XP_057781448.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	500	5.2e-22	78.4	Disease resistance protein Winged helix domain
`XP_057781448.1`	Pfam	`PF23598`	LRR_14	Repeat	533	828	1.1e-34	120.5	Leucine-rich repeat region
`XP_057781448.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	661	796	7.7e-40	136.4	R13L1/DRL21 LRRs
`XP_057781449.1`	Pfam	`PF18052`	Rx_N	Domain	8	96	2.4e-22	79.6	Rx N-terminal domain
`XP_057781449.1`	Pfam	`PF00931`	NB-ARC	Domain	184	348	2.6e-35	122.3	NB-ARC domain
`XP_057781449.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	500	5.2e-22	78.4	Disease resistance protein Winged helix domain
`XP_057781449.1`	Pfam	`PF23598`	LRR_14	Repeat	533	828	1.1e-34	120.5	Leucine-rich repeat region
`XP_057781449.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	661	796	7.7e-40	136.4	R13L1/DRL21 LRRs
`XP_057781450.1`	Pfam	`PF18052`	Rx_N	Domain	8	96	2.4e-22	79.6	Rx N-terminal domain
`XP_057781450.1`	Pfam	`PF00931`	NB-ARC	Domain	184	348	2.6e-35	122.3	NB-ARC domain
`XP_057781450.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	500	5.2e-22	78.4	Disease resistance protein Winged helix domain
`XP_057781450.1`	Pfam	`PF23598`	LRR_14	Repeat	533	828	1.1e-34	120.5	Leucine-rich repeat region
`XP_057781450.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	661	796	7.7e-40	136.4	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009093591.1
ACACACACACATACATAGCCAATTTTGTGAACTCTTGTTTAGTTTGCCTCAATTCTCTCTCTCACACACACACATCCACTTAGCAAATTTTGTAAGCTCTTGCTCAGTTTGCATCAATTCTCTCTTTCACACACACACCCACATCAAATTTTGTAAACTCTAGTTCAGTTTGCATCAAGTTCTCTCTCTCACACACATCCACATAGCAAATTTTGCAAACTCTTATTAAGAAAGTGTTTGCAGAAACAGGTCTTCTTGGA...

XM_057925462.1
ACACACACACATACATAGCCAATTTTGTGAACTCTTGTTTAGTTTGCCTCAATTCTCTCTCTCACACACACACATCCACTTAGCAAATTTTGTAAGCTCTTGCTCAGTTTGCATCAATTCTCTCTTTCACACACACACCCACATCAAATTTTGTAAACTCTAGTTCAGTTTGCATCAAGTTCTCTCTCTCACACACATCCACATAGCAAATTTTGCAAACTCTTATTAAGAAAGTGTTTGCAGAAACAGGTCTTCTTGGA...

CDS

5 records

下载 CDS FASTA

LOC130999812
ATGGAAGGAGGAGCTGCTGCTGCCGTTGAAGTTCTAGTTCAAAACCTCATCGACCTCTGCAAGAAAGAGATCTCTCAGATCCGAGATCTCAAAAAAGATGCGGCAAAGCTAACTAAGAGTCTCAAAACCATCCAGAAATTCTTGAACGACGCAGAGACGCGTGACATCACCAGCGAAGCTGTGAAGGAGTGGCTGAAGAATCTTGAAGACGTGGCTTTCGATGCTGACAATGTTTTGGATGAACTCAACTATCATATTCT...

Protein

5 records

下载 Protein FASTA

XP_057781445.1
MEGGAAAAVEVLVQNLIDLCKKEISQIRDLKKDAAKLTKSLKTIQKFLNDAETRDITSEAVKEWLKNLEDVAFDADNVLDELNYHILSDQINPAEPQEEKIPSCFSRLSCFSCCKNLSRSRNVALKIKEINENLESINKEATDLGLNVKFAKEPTLVIASLETDSFSDDPVFIGRDDVKLEIVEMLTNSITTDKRKVSTISIVGMGGLGKTTLTRNVFNHMKDETRFGSHIWVHVSPNFDALTLFKKILKELNDQVEGEN...

XP_057781446.1
MEGGAAAAVEVLVQNLIDLCKKEISQIRDLKKDAAKLTKSLKTIQKFLNDAETRDITSEAVKEWLKNLEDVAFDADNVLDELNYHILSDQINPAEPQEEKIPSCFSRLSCFSCCKNLSRSRNVALKIKEINENLESINKEATDLGLNVKFAKEPTLVIASLETDSFSDDPVFIGRDDVKLEIVEMLTNSITTDKRKVSTISIVGMGGLGKTTLTRNVFNHMKDETRFGSHIWVHVSPNFDALTLFKKILKELNDQVEGEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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