当前解析结果
SmilChr08G000235| 统一新 Gene ID | SmilChr08G000235 |
|---|---|
| 名称 | SmilChr08G000235 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1600851 - 1666261 / - |
| NCBI Gene ID | LOC130997035 |
|---|---|
| GeneID | 130997035 |
| locus_tag | - |
| NCBI Name | LOC130997035 |
| 原始查询 | SmilChr08G000235 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.59; qcov=0.908; evalue=1.52e-110; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=32.41; qcov=0.933; evalue=2.94e-122; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997035 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057778297.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057778297.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1600854 |
CG |
C |
1bp_deletion | frameshift_variant | 5 | B10,B18,C11,C37,C62 |
Chr8:1600854 |
CG |
C |
1bp_deletion | CDS_variant | 5 | B10,B18,C11,C37,C62 |
Chr8:1600856 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B24,B96,C27,C33 |
Chr8:1600857 |
GT |
G |
1bp_deletion | frameshift_variant | 5 | A10,B24,B96,C27,C33 |
Chr8:1600857 |
GT |
G |
1bp_deletion | CDS_variant | 5 | A10,B24,B96,C27,C33 |
Chr8:1600871 |
TGC |
* |
2bp_deletion | CDS_variant | 5 | A10,B24,B96,C27,C33 |
Chr8:1600902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr8:1600930 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B30,B64 |
Chr8:1600931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr8:1601045 |
A |
AG |
1bp_insertion | frameshift_variant | 5 | A21,B44,B89,B99,D2 |
Chr8:1601045 |
A |
AG |
1bp_insertion | CDS_variant | 5 | A21,B44,B89,B99,D2 |
Chr8:1601048 |
CA |
C |
1bp_deletion | frameshift_variant | 23 | A11,A3,B109,B111,B115,B124,B21,B33,B55,B58,B63,B95,B99,C15,C23,C29,C40,C62,C8,C82,C84,C86,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778297.1PF18052
Rx_N 17-94 aa
PF00931
NB-ARC 193-374 aa
PF23559
WHD_DRP 457-528 aa
PF23598
LRR_14 577-896 aa
PF25019
LRR_R13L1-DRL21 698-833 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778297.1 |
Pfam | PF18052 |
Rx_N | Domain | 17 | 94 | 1.2e-13 | 51.7 | Rx N-terminal domain |
XP_057778297.1 |
Pfam | PF00931 |
NB-ARC | Domain | 193 | 374 | 7.4e-31 | 107.7 | NB-ARC domain |
XP_057778297.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 457 | 528 | 4.6e-24 | 85.0 | Disease resistance protein Winged helix domain |
XP_057778297.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 577 | 896 | 1.6e-32 | 113.4 | Leucine-rich repeat region |
XP_057778297.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 698 | 833 | 4.3e-36 | 124.3 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。