Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000239`

染色体: Chr08 坐标: 1626885-1698830 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000239`
名称	SmilChr08G000239
描述	uncharacterized SmilChr08G000239
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1626885 - 1698830 / `-`

ID 对照

NCBI Gene ID	`LOC130997037`
GeneID	`130997037`
locus_tag	`-`
NCBI Name	`LOC130997037`
原始查询	`SmilChr08G000239`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	YR1; symbol=YR1; hit=Os05g0492200; species=rice; confidence=low
产物	YR1; symbol=YR1; hit=Os05g0492200; species=rice; confidence=low
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=32.4; qcov=0.406; evalue=6.96e-116; confidence=low
Rice	`Os05g0492200` (YR1) - identity=32.4; qcov=0.444; evalue=2.02e-122; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF05729 (NACHT); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130997037

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057778299.1`
2	Cytosol	细胞质基质	0.20000	`XP_057778299.1`
3	Nucleus	细胞核	0.00000	`XP_057778299.1`
4	Chromosome	染色体	0.00000	`XP_057778299.1`
5	Centromere	着丝粒	0.00000	`XP_057778299.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1640391`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B42
`Chr8:1640391`	`GT`	`G`	1bp_deletion	CDS_variant	1	B42
`Chr8:1640395`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B42
`Chr8:1640395`	`T`	`TC`	1bp_insertion	CDS_variant	1	B42
`Chr8:1640397`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr8:1640480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:1640491`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	D11
`Chr8:1640491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:1640500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:1640584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B126,B63,C25,C26,D5
`Chr8:1640643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A14,B105
`Chr8:1640673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778299.1

2300 aa

1150

2300

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

Rx_N

AAA_16

NB-ARC

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 8-95 aa PF00931 NB-ARC 179-348 aa PF23559 WHD_DRP 446-517 aa PF23598 LRR_14 562-851 aa PF25019 LRR_R13L1-DRL21 683-816 aa PF18052 Rx_N 1296-1383 aa PF13191 AAA_16 1458-1592 aa PF00931 NB-ARC 1469-1638 aa PF05729 NACHT 1486-1630 aa PF23559 WHD_DRP 1719-1786 aa PF23598 LRR_14 1847-2169 aa PF25019 LRR_R13L1-DRL21 1969-2103 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778299.1`	Pfam	`PF18052`	Rx_N	Domain	8	95	1.6e-39	134.6	Rx N-terminal domain
`XP_057778299.1`	Pfam	`PF00931`	NB-ARC	Domain	179	348	2e-71	239.9	NB-ARC domain
`XP_057778299.1`	Pfam	`PF23559`	WHD_DRP	Domain	446	517	3.1e-51	172.0	Disease resistance protein Winged helix domain
`XP_057778299.1`	Pfam	`PF23598`	LRR_14	Repeat	562	851	2.4e-65	221.3	Leucine-rich repeat region
`XP_057778299.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	683	816	3.9e-76	253.8	R13L1/DRL21 LRRs
`XP_057778299.1`	Pfam	`PF18052`	Rx_N	Domain	1296	1383	1.6e-39	134.6	Rx N-terminal domain
`XP_057778299.1`	Pfam	`PF13191`	AAA_16	Domain	1458	1592	1e-14	56.1	AAA ATPase domain
`XP_057778299.1`	Pfam	`PF00931`	NB-ARC	Domain	1469	1638	2e-71	239.9	NB-ARC domain
`XP_057778299.1`	Pfam	`PF05729`	NACHT	Domain	1486	1630	4.3e-13	50.2	NACHT domain
`XP_057778299.1`	Pfam	`PF23559`	WHD_DRP	Domain	1719	1786	3.1e-51	172.0	Disease resistance protein Winged helix domain
`XP_057778299.1`	Pfam	`PF23598`	LRR_14	Repeat	1847	2169	2.4e-65	221.3	Leucine-rich repeat region
`XP_057778299.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1969	2103	3.9e-76	253.8	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922316.1
TGTAAGCTCTTGCTCAGTTTGCATCAATTCTCTCTTTCACACACACACCCACATCAAATTTTGCAAACTCTTGTTCAGTTTGCATCAGTTCTCTCTCTCACACACATCCACATAGCAAATTTTGCAAACTCTTATTAAGAAAGTGTTTGCAGAAACAGATCTTCTTGGAAAAGCAGACAAGCTTAGTCTCTGGAGTTTTGTTTTTGACAGGGAACTGTGTTATTGAAGTTAAAGCCGAGTAGGGAAGAATAAAGTGAAAG...

CDS

1 records

下载 CDS FASTA

LOC130997037
ATGGAAGGAGGAGCTGCTGCTGCCGTTGAAGTTCTACTTCAAAACTTCATCGACCTTTCCAAGAAAGAGATCTCTCAAATCCGAGGTCTCGACAAAGATGCAGCAAAGCTAGCTGGGAGTCTCGACGTGATCAAAAATTTCTTGAAGGATGCCGAGACGCGTGAGATCACCAGTGATGCTGTCAAGAGCTGGCTGAAGAAACTTGAAAACGAGGCGTTCGATGCTGACAATGTTTTGGATGAACTCAACTATCATATTCT...

Protein

1 records

下载 Protein FASTA

XP_057778299.1
MEGGAAAAVEVLLQNFIDLSKKEISQIRGLDKDAAKLAGSLDVIKNFLKDAETREITSDAVKSWLKKLENEAFDADNVLDELNYHILSKQIKATKSMKAKVLSCFSSPFNSIARPRKMAVKIQEINENLESFKKEATELGLVAKLENEPTLVNTSIFETDSFTLDPIFIGRDDVESEIVEMLINGITTDERAVSILPIVGMGGLGKTTLTRKVFNRLKDESRFGSHLWVHVSPNFDAITLFKKILNNLTSCQVEIASRED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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