当前解析结果
SmilChr08G000240| 统一新 Gene ID | SmilChr08G000240 |
|---|---|
| 名称 | SmilChr08G000240 |
| 描述 | long-chain-alcohol oxidase FAO1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1652036 - 1655107 / + |
| NCBI Gene ID | LOC130997038 |
|---|---|
| GeneID | 130997038 |
| locus_tag | - |
| NCBI Name | LOC130997038 |
| 原始查询 | SmilChr08G000240 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | long-chain-alcohol oxidase FAO1-like |
| 产物 | long-chain-alcohol oxidase FAO1-like |
| Arabidopsis | AT3G23410 (FAO3)fatty alcohol oxidase 3 [Source:NCBI gene (formerly Entrezgene);Acc:821922] identity=57.2; qcov=0.944; evalue=0; confidence=high |
| Rice | Os10g0475100- identity=55.6; qcov=0.997; evalue=0; confidence=high |
| GO | GO:0046577 (long-chain-alcohol oxidase activity); GO:0050660 (flavin adenine dinucleotide binding) |
| KEGG | - |
| Pfam | PF00732 (GMC_oxred_N); PF00890 (FAD_binding_2); PF05199 (GMC_oxred_C); PF13450 (NAD_binding_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997038 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057778301.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.40000 | XP_057778301.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057778301.1 |
| 4 | Mitochondrion outer membrane | 线粒体外膜 | 0.20000 | XP_057778301.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057778301.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1652043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,C11,C69 |
Chr8:1652045 |
C |
T |
EMS_canonical_SNV | stop_gained | 66 | A1,A19,A2,A20,A22,A23,A7,B101,B102,B103,B109,B115,B118,B121,B122,B124,B127,B129,B131,B132,B18,B25,B33,B36,B37,B40,B41,B46,B47,B5,B52,B59,B61,B62,B68,B70,B75,B79,B8,B87,B88,B90,B92,B97,C13,C18,C2,C27,C29,C32,C35,C37,C39,C44,C52,C56,C61,C64,C68,C72,C74,C76,C8,C85,D8,D9 |
Chr8:1653119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:1653144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C45,C68,C78 |
Chr8:1653166 |
AT |
A |
1bp_deletion | frameshift_variant | 17 | A2,A7,B136,B40,B42,B54,C11,C15,C27,C45,C60,C68,C69,C7,C76,C78,D3 |
Chr8:1653266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C69 |
Chr8:1653301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:1653340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B133,B80,C48,C65 |
Chr8:1653344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B72 |
Chr8:1653356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr8:1653359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr8:1653386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778301.1PF00890
FAD_binding_2 123-155 aa
PF13450
NAD_binding_8 126-154 aa
PF00732
GMC_oxred_N 169-380 aa
PF05199
GMC_oxred_C 479-605 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778301.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 123 | 155 | 5e-07 | 30.0 | FAD binding domain |
XP_057778301.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 126 | 154 | 6.7e-05 | 23.8 | NAD(P)-binding Rossmann-like domain |
XP_057778301.1 |
Pfam | PF00732 |
GMC_oxred_N | Domain | 169 | 380 | 5e-66 | 223.4 | GMC oxidoreductase |
XP_057778301.1 |
Pfam | PF05199 |
GMC_oxred_C | Domain | 479 | 605 | 2.4e-23 | 83.9 | GMC oxidoreductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。