Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000242`

染色体: Chr08 坐标: 1667654-1675293 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000242`
名称	SmilChr08G000242
描述	putative disease resistance protein RGA3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1667654 - 1675293 / `-`

ID 对照

NCBI Gene ID	`LOC130999815`
GeneID	`130999815`
locus_tag	`-`
NCBI Name	`LOC130999815`
原始查询	`SmilChr08G000242`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA3
产物	putative disease resistance protein RGA3
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31.78; qcov=0.932; evalue=3.17e-119; confidence=low
Rice	`Os05g0492200` (YR1) - identity=32.1; qcov=0.998; evalue=5.42e-129; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999815

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781458.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781458.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1669577`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C33
`Chr8:1669577`	`TC`	`T`	1bp_deletion	CDS_variant	1	C33
`Chr8:1669580`	`CG`	`C`	1bp_deletion	frameshift_variant	8	A25,B137,B65,B9,C43,C46,C48,C63
`Chr8:1669591`	`ATT`	`A`	2bp_deletion	frameshift_variant	4	A25,B137,B9,C46
`Chr8:1669591`	`ATT`	`A`	2bp_deletion	CDS_variant	4	A25,B137,B9,C46
`Chr8:1669595`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	C28
`Chr8:1669595`	`G`	`GAA`	2bp_insertion	CDS_variant	1	C28
`Chr8:1669610`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:1669616`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B44
`Chr8:1669616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:1669619`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr8:1669637`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B38,B40,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781458.1

975 aa

488

975

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 10-97 aa PF00931 NB-ARC 183-350 aa PF13401 AAA_22 200-288 aa PF23559 WHD_DRP 434-505 aa PF23598 LRR_14 538-832 aa PF25019 LRR_R13L1-DRL21 666-800 aa PF23247 LRR_RPS2 753-883 aa

XP_057781459.1

975 aa

488

975

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

XP_057781460.1

975 aa

488

975

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781458.1`	Pfam	`PF18052`	Rx_N	Domain	10	97	2.1e-22	79.7	Rx N-terminal domain
`XP_057781458.1`	Pfam	`PF00931`	NB-ARC	Domain	183	350	1.3e-36	126.5	NB-ARC domain
`XP_057781458.1`	Pfam	`PF13401`	AAA_22	Domain	200	288	1.1e-07	32.9	AAA domain
`XP_057781458.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	505	4.8e-22	78.5	Disease resistance protein Winged helix domain
`XP_057781458.1`	Pfam	`PF23598`	LRR_14	Repeat	538	832	3.1e-34	119.0	Leucine-rich repeat region
`XP_057781458.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	666	800	1.4e-35	122.7	R13L1/DRL21 LRRs
`XP_057781458.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	753	883	6e-09	36.8	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781459.1`	Pfam	`PF18052`	Rx_N	Domain	10	97	2.1e-22	79.7	Rx N-terminal domain
`XP_057781459.1`	Pfam	`PF00931`	NB-ARC	Domain	183	350	1.3e-36	126.5	NB-ARC domain
`XP_057781459.1`	Pfam	`PF13401`	AAA_22	Domain	200	288	1.1e-07	32.9	AAA domain
`XP_057781459.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	505	4.8e-22	78.5	Disease resistance protein Winged helix domain
`XP_057781459.1`	Pfam	`PF23598`	LRR_14	Repeat	538	832	3.1e-34	119.0	Leucine-rich repeat region
`XP_057781459.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	666	800	1.4e-35	122.7	R13L1/DRL21 LRRs
`XP_057781459.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	753	883	6e-09	36.8	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781460.1`	Pfam	`PF18052`	Rx_N	Domain	10	97	2.1e-22	79.7	Rx N-terminal domain
`XP_057781460.1`	Pfam	`PF00931`	NB-ARC	Domain	183	350	1.3e-36	126.5	NB-ARC domain
`XP_057781460.1`	Pfam	`PF13401`	AAA_22	Domain	200	288	1.1e-07	32.9	AAA domain
`XP_057781460.1`	Pfam	`PF23559`	WHD_DRP	Domain	434	505	4.8e-22	78.5	Disease resistance protein Winged helix domain
`XP_057781460.1`	Pfam	`PF23598`	LRR_14	Repeat	538	832	3.1e-34	119.0	Leucine-rich repeat region
`XP_057781460.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	666	800	1.4e-35	122.7	R13L1/DRL21 LRRs
`XP_057781460.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	753	883	6e-09	36.8	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925477.1
AGTAGAATAATGAGGGAGAATTATTGAATGAAGAAGGAAGAAGACAAGATAATATGCTGCCTTGTTGATAATAAAACAATTCGTGTGATAGAAAACATATTAGTATTTCAAATATTGTTTATGAATAAATTGTCTTGTTCATGCAAGCTACCATATGTTCACGCGTAAAGATGCCTCGATGAGATTGAATTCTATTTAAAAATTGAAAAACAAAGACTTAGAAGTTAGATCTACAGATAAATTTTGTCAACTCTTGTTCA...

XM_057925476.1
AGTAGAATAATGAGGGAGAATTATTGAATGAAGAAGGAAGAAGACAAGATAATATGCTGCCTTGTTGATAATAAAACAATTCGTGTGATAGAAAACATATTAGTATTTCAAATATTGTTTATGAATAAATTGTCTTGTTCATGCAAGCTACCATATGTTCACGCGTAAAGATGCCTCGATGAGATTGAATTCTATTTAAAAATTGAAAAACAAAGACTTAGAAGTTAGATCTACAGATAAATTTTGTCAACTCTTGTTCA...

CDS

3 records

下载 CDS FASTA

LOC130999815
ATGGAAGGGGAAGCTGCTGCCGCCATCCTTCAAACTCTAGTTCAAAACCTCATCGACCTCTGCAAGAAAGAGATCTCTCAGATCCGAGATCTCAAAAAAGATGCCGCAAAGCTAACTAAGAGTCTCAAAACCATCCAGAAATTCTTGAACGACGCGGAGACGCGTGACATCACCAGCGAAGCTGTCAAGGAGTGGCTGAAGAATCTTGAAGACGTGGCTTTCGATGCTGACAATGTTTTGGATGAACTCAACTATCATAT...

Protein

3 records

下载 Protein FASTA

XP_057781458.1
MEGEAAAAILQTLVQNLIDLCKKEISQIRDLKKDAAKLTKSLKTIQKFLNDAETRDITSEAVKEWLKNLEDVAFDADNVLDELNYHILSKQIKPAEPEEEKIPSCFSRLSCFSCCKNLSRSRNVALKIKEINENLESINKEATDLGLVGRLADEPTLVIAALETDSYTLDPIFIGRDDVASKIVEMLTNSITTDDERAVSIISIVGMGGLGKTTLTRKVFNHLKDETRFGSHIWVHVSPNFDALTLFKKILKELTDQVEG...

XP_057781459.1
MEGEAAAAILQTLVQNLIDLCKKEISQIRDLKKDAAKLTKSLKTIQKFLNDAETRDITSEAVKEWLKNLEDVAFDADNVLDELNYHILSKQIKPAEPEEEKIPSCFSRLSCFSCCKNLSRSRNVALKIKEINENLESINKEATDLGLVGRLADEPTLVIAALETDSYTLDPIFIGRDDVASKIVEMLTNSITTDDERAVSIISIVGMGGLGKTTLTRKVFNHLKDETRFGSHIWVHVSPNFDALTLFKKILKELTDQVEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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