当前解析结果
SmilChr08G000244| 统一新 Gene ID | SmilChr08G000244 |
|---|---|
| 名称 | SmilChr08G000244 |
| 描述 | putative disease resistance protein RGA4 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1688210 - 1691395 / - |
| NCBI Gene ID | LOC130997040 |
|---|---|
| GeneID | 130997040 |
| locus_tag | - |
| NCBI Name | LOC130997040 |
| 原始查询 | SmilChr08G000244 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA4 |
| 产物 | putative disease resistance protein RGA4 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.9; qcov=0.9; evalue=1.03e-118; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=32.2; qcov=1.05; evalue=5.7e-133; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997040 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778303.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057778303.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778303.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778303.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778303.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1688242 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | A7 |
Chr8:1688242 |
CG |
C |
1bp_deletion | CDS_variant | 1 | A7 |
Chr8:1688243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B62,B88 |
Chr8:1688244 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | A7 |
Chr8:1688244 |
AG |
A |
1bp_deletion | CDS_variant | 1 | A7 |
Chr8:1688247 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | A7 |
Chr8:1688247 |
CG |
C |
1bp_deletion | CDS_variant | 1 | A7 |
Chr8:1688261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,B88 |
Chr8:1688289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B31,B54,D4 |
Chr8:1688290 |
CT |
* |
1bp_deletion | CDS_variant | 1 | A7 |
Chr8:1688294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B31,B68,B83,D4 |
Chr8:1688300 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778303.1PF18052
Rx_N 8-96 aa
PF00931
NB-ARC 179-348 aa
PF23559
WHD_DRP 429-500 aa
PF23598
LRR_14 541-832 aa
PF25019
LRR_R13L1-DRL21 666-799 aa
PF23247
LRR_RPS2 767-883 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778303.1 |
Pfam | PF18052 |
Rx_N | Domain | 8 | 96 | 1.6e-20 | 73.7 | Rx N-terminal domain |
XP_057778303.1 |
Pfam | PF00931 |
NB-ARC | Domain | 179 | 348 | 2.8e-34 | 118.9 | NB-ARC domain |
XP_057778303.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 429 | 500 | 7.5e-25 | 87.5 | Disease resistance protein Winged helix domain |
XP_057778303.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 541 | 832 | 3.1e-36 | 125.6 | Leucine-rich repeat region |
XP_057778303.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 666 | 799 | 2.8e-36 | 124.9 | R13L1/DRL21 LRRs |
XP_057778303.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 767 | 883 | 1.4e-10 | 42.1 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。