Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000250`

染色体: Chr08 坐标: 1728558-1760185 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000250`
名称	SmilChr08G000250
描述	tubulin gamma-1 chain
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1728558 - 1760185 / `-`

ID 对照

NCBI Gene ID	`LOC130999825`
GeneID	`130999825`
locus_tag	`-`
NCBI Name	`LOC130999825`
原始查询	`SmilChr08G000250`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tubulin gamma-1 chain
产物	tubulin gamma-1 chain
Arabidopsis	`AT3G61650` (TUBG1) gamma-tubulin [Source:NCBI gene (formerly Entrezgene);Acc:825338] identity=94.29; qcov=0.998; evalue=0.0; confidence=high
Rice	`Os05g0156600` (TUBG2) - identity=90.08; qcov=1.0; evalue=0.0; confidence=high
GO	GO:0000070 (mitotic sister chromatid segregation); GO:0000212 (meiotic spindle organization); GO:0000278 (mitotic cell cycle); GO:0000930 (gamma-tubulin complex); GO:0005200 (structural constituent of cytoskeleton); GO:0005525 (GTP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005813 (centrosome); GO:0005819 (spindle); GO:0005874 (microtubule); GO:0007020 (microtubule nucleation); GO:0007052 (mitotic spindle organization); GO:0031122 (cytoplasmic microtubule organization)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00091 (Tubulin); PF03953 (Tubulin_C)
InterPro	-
eggNOG	-
NR	GeneID:130999825

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Cytoskeleton	细胞骨架	0.80000	`XP_057781471.1`
2	Spindle	Spindle	0.80000	`XP_057781471.1`
3	Spindle pole	Spindle pole	0.80000	`XP_057781471.1`
4	Centrosome	中心体	0.40000	`XP_057781471.1`
5	Midbody	Midbody	0.40000	`XP_057781474.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1756401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,C37,C50
`Chr8:1757363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr8:1757375`	`T`	`TC`	1bp_insertion	frameshift_variant	2	B130,C60
`Chr8:1757375`	`T`	`TC`	1bp_insertion	CDS_variant	2	B130,C60
`Chr8:1757450`	`G`	`A`	EMS_canonical_SNV	stop_gained	37	A25,A4,B107,B111,B113,B12,B122,B123,B127,B137,B139,B15,B17,B34,B40,B50,B53,B55,B6,B82,B9,C10,C18,C20,C22,C26,C3,C30,C46,C55,C64,C65,C66,C67,C76,C86,D9
`Chr8:1757466`	`TGA`	`T`	2bp_deletion	frameshift_variant	178	A1,A10,A11,A15,A18,A19,A2,A20,A22,A24,A25,A4,A5,A6,A7,B1,B100,B103,B104,B105,B107,B108,B109,B110,B111,B112,B113,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B127,B128,B129,B13,B131,B132,B134,B135,B136,B137,B139,B140,B15,B16,B17,B19,B2,B21,B23,B24,B25,B27,B28,B29,B3,B32,B33,B34,B36,B37,B4,B40,B41,B42,B43,B44,B45,B46,B48,B49,B50,B52,B53,B54,B55,B56,B58,B6,B60,B61,B62,B64,B66,B67,B68,B69,B71,B73,B74,B75,B76,B78,B79,B8,B80,B82,B83,B86,B88,B89,B9,B90,B91,B92,B94,B96,B97,B98,B99,C10,C11,C12,C17,C18,C19,C20,C22,C26,C27,C28,C29,C3,C30,C31,C32,C33,C35,C36,C37,C38,C39,C40,C41,C45,C46,C47,C50,C54,C55,C56,C57,C58,C6,C60,C61,C62,C64,C65,C66,C67,C68,C69,C72,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C85,C86,D1,D10,D4,D6,D9
`Chr8:1757469`	`G`	`GAT`	2bp_insertion	frameshift_variant	115	A1,A10,A11,A15,A18,A19,A2,A20,A22,A6,A7,B1,B100,B103,B109,B110,B112,B115,B117,B119,B121,B124,B125,B129,B132,B135,B136,B140,B15,B16,B19,B2,B21,B23,B24,B25,B28,B29,B32,B33,B36,B37,B4,B42,B43,B44,B45,B48,B52,B54,B58,B60,B61,B62,B64,B66,B68,B71,B73,B74,B75,B76,B78,B79,B8,B80,B88,B89,B9,B90,B92,B97,B98,B99,C12,C17,C18,C19,C27,C29,C3,C30,C31,C32,C35,C36,C37,C38,C39,C40,C41,C42,C47,C50,C56,C58,C6,C60,C61,C62,C64,C66,C68,C72,C74,C75,C8,C80,C82,C85,C86,D1,D10,D4,D6
`Chr8:1757470`	`A`	`AT`	1bp_insertion	frameshift_variant	33	A15,A19,A2,A20,A22,A7,B115,B121,B122,B124,B125,B132,B25,B37,B4,B45,B48,B58,B61,B62,B76,B8,B88,B90,C17,C18,C31,C35,C37,C56,C8,D1,D10
`Chr8:1757478`	`GA`	`G`	1bp_deletion	frameshift_variant	94	A1,A10,A11,A15,A18,A19,A2,A20,A22,A6,B1,B100,B103,B109,B110,B112,B115,B117,B119,B121,B124,B125,B132,B135,B140,B16,B19,B24,B25,B28,B29,B32,B33,B36,B4,B44,B45,B48,B52,B54,B58,B60,B61,B62,B64,B66,B68,B73,B74,B76,B78,B79,B8,B80,B88,B90,B92,B97,B98,B99,C12,C17,C18,C19,C27,C29,C3,C31,C35,C36,C37,C38,C39,C40,C41,C42,C47,C50,C56,C58,C6,C61,C62,C68,C74,C75,C8,C80,C82,C85,D1,D10,D11,D6
`Chr8:1757501`	`A`	`AT`	1bp_insertion	frameshift_variant	18	A1,A11,A16,A22,B117,B27,B49,B67,B68,B69,B72,B86,C14,C24,C26,C46,D2,D9
`Chr8:1757537`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B120,B131,C46
`Chr8:1757537`	`CA`	`C`	1bp_deletion	CDS_variant	3	B120,B131,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781471.1

496 aa

248

496

Tubulin

Tubulin_C

PF00091 Tubulin 4-214 aa PF03953 Tubulin_C 264-303 aa PF03953 Tubulin_C 318-415 aa

XP_057781472.1

496 aa

248

496

Tubulin

Tubulin_C

PF00091 Tubulin 4-214 aa PF03953 Tubulin_C 264-303 aa PF03953 Tubulin_C 318-415 aa

XP_057781473.1

496 aa

248

496

Tubulin

Tubulin_C

PF00091 Tubulin 4-214 aa PF03953 Tubulin_C 264-303 aa PF03953 Tubulin_C 318-415 aa

XP_057781474.1

474 aa

237

474

Tubulin

Tubulin_C

PF00091 Tubulin 4-214 aa PF03953 Tubulin_C 264-393 aa

XP_057781475.1

474 aa

237

474

Tubulin

Tubulin_C

PF00091 Tubulin 4-214 aa PF03953 Tubulin_C 264-393 aa

XP_057781476.1

474 aa

237

474

Tubulin

Tubulin_C

PF00091 Tubulin 4-214 aa PF03953 Tubulin_C 264-393 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781471.1`	Pfam	`PF00091`	Tubulin	Domain	4	214	8.6e-62	209.5	Tubulin/FtsZ family, GTPase domain
`XP_057781471.1`	Pfam	`PF03953`	Tubulin_C	Domain	264	303	1e-40	139.5	Tubulin C-terminal domain
`XP_057781471.1`	Pfam	`PF03953`	Tubulin_C	Domain	318	415	1e-40	139.5	Tubulin C-terminal domain
`XP_057781472.1`	Pfam	`PF00091`	Tubulin	Domain	4	214	8.6e-62	209.5	Tubulin/FtsZ family, GTPase domain
`XP_057781472.1`	Pfam	`PF03953`	Tubulin_C	Domain	264	303	1e-40	139.5	Tubulin C-terminal domain
`XP_057781472.1`	Pfam	`PF03953`	Tubulin_C	Domain	318	415	1e-40	139.5	Tubulin C-terminal domain
`XP_057781473.1`	Pfam	`PF00091`	Tubulin	Domain	4	214	8.6e-62	209.5	Tubulin/FtsZ family, GTPase domain
`XP_057781473.1`	Pfam	`PF03953`	Tubulin_C	Domain	264	303	1e-40	139.5	Tubulin C-terminal domain
`XP_057781473.1`	Pfam	`PF03953`	Tubulin_C	Domain	318	415	1e-40	139.5	Tubulin C-terminal domain
`XP_057781474.1`	Pfam	`PF00091`	Tubulin	Domain	4	214	8e-62	209.6	Tubulin/FtsZ family, GTPase domain
`XP_057781474.1`	Pfam	`PF03953`	Tubulin_C	Domain	264	393	6e-44	150.0	Tubulin C-terminal domain
`XP_057781475.1`	Pfam	`PF00091`	Tubulin	Domain	4	214	8e-62	209.6	Tubulin/FtsZ family, GTPase domain
`XP_057781475.1`	Pfam	`PF03953`	Tubulin_C	Domain	264	393	6e-44	150.0	Tubulin C-terminal domain
`XP_057781476.1`	Pfam	`PF00091`	Tubulin	Domain	4	214	8e-62	209.6	Tubulin/FtsZ family, GTPase domain
`XP_057781476.1`	Pfam	`PF03953`	Tubulin_C	Domain	264	393	6e-44	150.0	Tubulin C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057925492.1
ATCTTTGATCTTCTATTGGGCAAGAGGAATTAAAATGTCCAACAAAAAAGAAAAATAAAAAGAAAAAGAGAGAAATTGGGCCAAAACTTCTGCGTTTGAAGCATAAATGCCTGTGTTTTATTCCCCCGCCATTTCACCATAATCCAATTCCAAAACCAAAACCCCCAATTTTTCTTTCACCTGTTTCTTCACTTCACTTCACTTCACTCTTGTCAAAATTCGCTAAAACCCTACTCCGATTGCAGCTTCAATTTCTGAGT...

XM_057925493.1
ATCTTTGATCTTCTATTGGGCAAGAGGAATTAAAATGTCCAACAAAAAAGAAAAATAAAAAGAAAAAGAGAGAAATTGGGCCAAAACTTCTGCGTTTGAAGCATAAATGCCTGTGTTTTATTCCCCCGCCATTTCACCATAATCCAATTCCAAAACCAAAACCCCCAATTTTTCTTTCACCTGTTTCTTCACTTCACTTCACTTCACTCTTGTCAAAATTCGCTAAAACCCTACTCCGATTGCAGCTTCAATTTCTGAGT...

CDS

6 records

下载 CDS FASTA

lcl|NC_080394.1_cds_XP_057781474.1_40485
ATGCCTCGCGAAATAATCACGCTGCAGGTGGGCCAATGCGGCAACCAGATCGGGATGGAGTTCTGGAAGCAGCTCTGCCTCGAGCACGGCATCAGCAAAGACGGCATTCTCGAAGATTTCGCCACTCAGGGAGGTGATCGTAAGGATGTGTTTTTCTATCAAGCAGATGACCAGCATTATATACCACGTGCGTTGCTTATGGATTTGGAGCCTAGAGTGATTAATGGCATACAAAATGGTGAATACAGGAATCTCTACAA...

lcl|NC_080394.1_cds_XP_057781475.1_40486
ATGCCTCGCGAAATAATCACGCTGCAGGTGGGCCAATGCGGCAACCAGATCGGGATGGAGTTCTGGAAGCAGCTCTGCCTCGAGCACGGCATCAGCAAAGACGGCATTCTCGAAGATTTCGCCACTCAGGGAGGTGATCGTAAGGATGTGTTTTTCTATCAAGCAGATGACCAGCATTATATACCACGTGCGTTGCTTATGGATTTGGAGCCTAGAGTGATTAATGGCATACAAAATGGTGAATACAGGAATCTCTACAA...

Protein

6 records

下载 Protein FASTA

XP_057781471.1
MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLMDLEPRVINGIQNGEYRNLYNHENVFIADHGGGAGNNWASGYHQGKQYEEDLMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQNETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHITTPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASL...

XP_057781472.1
MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLMDLEPRVINGIQNGEYRNLYNHENVFIADHGGGAGNNWASGYHQGKQYEEDLMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQNETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHITTPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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