Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000252`

染色体: Chr08 坐标: 1748276-1754703 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000252`
名称	SmilChr08G000252
描述	putative disease resistance protein RGA3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1748276 - 1754703 / `-`

ID 对照

NCBI Gene ID	`LOC130999818`
GeneID	`130999818`
locus_tag	`-`
NCBI Name	`LOC130999818`
原始查询	`SmilChr08G000252`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA3
产物	putative disease resistance protein RGA3
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31.2; qcov=1.03; evalue=2.29e-107; confidence=low
Rice	`Os05g0492200` (YR1) - identity=33.7; qcov=1.01; evalue=1.19e-116; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999818

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057781462.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781462.1`
3	Nucleus	细胞核	0.00000	`XP_057781462.1`
4	Chromosome	染色体	0.00000	`XP_057781462.1`
5	Centromere	着丝粒	0.00000	`XP_057781462.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1750814`	`T`	`TG`	1bp_insertion	frameshift_variant	2	B129,C72
`Chr8:1750814`	`T`	`TG`	1bp_insertion	CDS_variant	2	B129,C72
`Chr8:1750816`	`G`	`GA`	1bp_insertion	frameshift_variant	2	C12,C49
`Chr8:1750816`	`G`	`GA`	1bp_insertion	CDS_variant	2	C12,C49
`Chr8:1752176`	`T`	`TG`	1bp_insertion	frameshift_variant	2	B105,B71
`Chr8:1752176`	`T`	`TG`	1bp_insertion	CDS_variant	2	B105,B71
`Chr8:1752178`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B105,B71
`Chr8:1752178`	`TC`	`T`	1bp_deletion	CDS_variant	2	B105,B71
`Chr8:1752182`	`A`	`ACC`	2bp_insertion	frameshift_variant	1	B73
`Chr8:1752182`	`A`	`ACC`	2bp_insertion	CDS_variant	1	B73
`Chr8:1752184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B11,B85
`Chr8:1752206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781462.1

833 aa

416

833

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 8-97 aa PF00931 NB-ARC 179-348 aa PF23559 WHD_DRP 431-502 aa PF23598 LRR_14 543-808 aa PF25019 LRR_R13L1-DRL21 672-806 aa

XP_057781463.1

833 aa

416

833

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 8-97 aa PF00931 NB-ARC 179-348 aa PF23559 WHD_DRP 431-502 aa PF23598 LRR_14 543-808 aa PF25019 LRR_R13L1-DRL21 672-806 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781462.1`	Pfam	`PF18052`	Rx_N	Domain	8	97	2.8e-20	72.9	Rx N-terminal domain
`XP_057781462.1`	Pfam	`PF00931`	NB-ARC	Domain	179	348	1.9e-34	119.5	NB-ARC domain
`XP_057781462.1`	Pfam	`PF23559`	WHD_DRP	Domain	431	502	2.1e-24	86.1	Disease resistance protein Winged helix domain
`XP_057781462.1`	Pfam	`PF23598`	LRR_14	Repeat	543	808	1.2e-30	107.2	Leucine-rich repeat region
`XP_057781462.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	672	806	4e-34	118.0	R13L1/DRL21 LRRs
`XP_057781463.1`	Pfam	`PF18052`	Rx_N	Domain	8	97	2.8e-20	72.9	Rx N-terminal domain
`XP_057781463.1`	Pfam	`PF00931`	NB-ARC	Domain	179	348	1.9e-34	119.5	NB-ARC domain
`XP_057781463.1`	Pfam	`PF23559`	WHD_DRP	Domain	431	502	2.1e-24	86.1	Disease resistance protein Winged helix domain
`XP_057781463.1`	Pfam	`PF23598`	LRR_14	Repeat	543	808	1.2e-30	107.2	Leucine-rich repeat region
`XP_057781463.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	672	806	4e-34	118.0	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925480.1
AGGCTGTAAAATCTTGAGCTTGCATCACTCATCCAATTCTACTGCTTTGCTATCTCTCTCACTCAATTTCTCTCTTTCTCTCTCTAAGTTATCAGCACAAAGAATGGAAGGAGGAGCTGCTGCTGCCGTTGAAGTTCTAGTTCAAAACCTCATCGACCTCTGCAAGAAAGAGATCTCTCAAATCCGAGGTCTCGACAAAGATGCAGCAAAGCTAGCTGGGAGTCTCGACGTGATCAAAAATTTCTTGAAGGATGCCGAGA...

XM_057925479.1
AGGCTGTAAAATCTTGAGCTTGCATCACTCATCCAATTCTACTGCTTTGCTATCTCTCTCACTCAATTTCTCTCTTTCTCTCTCTAAGTTATCAGCACAAAGAATGGAAGGAGGAGCTGCTGCTGCCGTTGAAGTTCTAGTTCAAAACCTCATCGACCTCTGCAAGAAAGAGATCTCTCAAATCCGAGGTCTCGACAAAGATGCAGCAAAGCTAGCTGGGAGTCTCGACGTGATCAAAAATTTCTTGAAGGATGCCGAGA...

CDS

2 records

下载 CDS FASTA

LOC130999818
ATGGAAGGAGGAGCTGCTGCTGCCGTTGAAGTTCTAGTTCAAAACCTCATCGACCTCTGCAAGAAAGAGATCTCTCAAATCCGAGGTCTCGACAAAGATGCAGCAAAGCTAGCTGGGAGTCTCGACGTGATCAAAAATTTCTTGAAGGATGCCGAGACGCGTGAGATCACCAGTGACGCTGTCAAGAGCTGGCTGAAGAAGCTTGAAAACGAGGCGTTCGATGCTGACAATGTTTTGGATGAACTCAACTATCATATTCT...

Protein

2 records

下载 Protein FASTA

XP_057781462.1
MEGGAAAAVEVLVQNLIDLCKKEISQIRGLDKDAAKLAGSLDVIKNFLKDAETREITSDAVKSWLKKLENEAFDADNVLDELNYHILSKKIKATKPMKAKVLSCFSSSFNSIARPRKMAVRIKEINENFESIKKEATELGLVARLENEPTLVNAATFETDSFTLDPIFIGRDDVASEIVEMLTNSITTDEQAVSILPIVGMGGLGKTTLTRKVFNRLKDESRFGSHLWVHVSPNFDAITLFKKILNNLTSCQVEIASRED...

XP_057781463.1
MEGGAAAAVEVLVQNLIDLCKKEISQIRGLDKDAAKLAGSLDVIKNFLKDAETREITSDAVKSWLKKLENEAFDADNVLDELNYHILSKKIKATKPMKAKVLSCFSSSFNSIARPRKMAVRIKEINENFESIKKEATELGLVARLENEPTLVNAATFETDSFTLDPIFIGRDDVASEIVEMLTNSITTDEQAVSILPIVGMGGLGKTTLTRKVFNRLKDESRFGSHLWVHVSPNFDAITLFKKILNNLTSCQVEIASRED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器