当前解析结果
SmilChr08G000253| 统一新 Gene ID | SmilChr08G000253 |
|---|---|
| 名称 | SmilChr08G000253 |
| 描述 | protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1760672 - 1764355 / - |
| NCBI Gene ID | LOC130999848 |
|---|---|
| GeneID | 130999848 |
| locus_tag | - |
| NCBI Name | LOC130999848 |
| 原始查询 | SmilChr08G000253 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha |
| 产物 | protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha |
| Arabidopsis | AT3G59380 (FTA)farnesyltransferase A [Source:NCBI gene (formerly Entrezgene);Acc:825107] identity=63.6; qcov=0.961; evalue=1.37e-145; confidence=high |
| Rice | Os09g0514400- identity=59.8; qcov=0.997; evalue=4.54e-138; confidence=high |
| GO | GO:0004660 (protein farnesyltransferase activity); GO:0004662 (CAAX-protein geranylgeranyltransferase activity); GO:0005737 (cytoplasm); GO:0005953 (CAAX-protein geranylgeranyltransferase complex); GO:0005965 (protein farnesyltransferase complex); GO:0018343 (protein farnesylation); GO:0018344 (protein geranylgeranylation) |
| KEGG | smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01239 (PPTA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999848 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781505.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057781505.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057781505.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781505.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781505.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1760908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr8:1760950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B91 |
Chr8:1760960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B49 |
Chr8:1760963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B49 |
Chr8:1760976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:1760984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B74,C12,C41,C50 |
Chr8:1761040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B77,C1,C25,D7 |
Chr8:1761088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr8:1761118 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:1761124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B74,C12,C41,C50 |
Chr8:1761139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,C53,D3 |
Chr8:1761178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781505.1PF01239
PPTA 64-92 aa
PF01239
PPTA 97-127 aa
PF01239
PPTA 135-164 aa
PF01239
PPTA 167-196 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781505.1 |
Pfam | PF01239 |
PPTA | Repeat | 64 | 92 | 1.7e-41 | 137.9 | Protein prenyltransferase alpha subunit repeat |
XP_057781505.1 |
Pfam | PF01239 |
PPTA | Repeat | 97 | 127 | 1.7e-41 | 137.9 | Protein prenyltransferase alpha subunit repeat |
XP_057781505.1 |
Pfam | PF01239 |
PPTA | Repeat | 135 | 164 | 1.7e-41 | 137.9 | Protein prenyltransferase alpha subunit repeat |
XP_057781505.1 |
Pfam | PF01239 |
PPTA | Repeat | 167 | 196 | 1.7e-41 | 137.9 | Protein prenyltransferase alpha subunit repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。