Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000256`

染色体: Chr08 坐标: 1771476-1776221 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000256`
名称	SmilChr08G000256
描述	casein kinase 1-like protein 10
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1771476 - 1776221 / `-`

ID 对照

NCBI Gene ID	`LOC130999847`
GeneID	`130999847`
locus_tag	`-`
NCBI Name	`LOC130999847`
原始查询	`SmilChr08G000256`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	casein kinase 1-like protein 10
产物	casein kinase 1-like protein 10
Arabidopsis	`AT3G23340` (ckl10) casein kinase I-like 10 [Source:NCBI gene (formerly Entrezgene);Acc:821915] identity=74.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0810400` - identity=69.4; qcov=1.06; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006897 (endocytosis); GO:0007165 (signal transduction); GO:0018105 (peptidyl-serine phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal)
InterPro	-
eggNOG	-
NR	GeneID:130999847

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057781503.1`
2	Cytosol	细胞质基质	1.00000	`XP_057781503.1`
3	Nucleus	细胞核	0.80000	`XP_057781503.1`
4	Midbody	Midbody	0.60000	`XP_057781504.1`
5	Nucleoplasm	核质	0.40000	`XP_057781503.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1771857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr8:1771904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,C4
`Chr8:1772003`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B67
`Chr8:1772052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C8,C85
`Chr8:1772261`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C17,C4,C48
`Chr8:1772276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,C1,C44,C59
`Chr8:1772708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr8:1773107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr8:1773109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr8:1773353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,C1,C44,C59
`Chr8:1773484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,C1,C25
`Chr8:1773526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781503.1

447 aa

224

447

Pkinase

PK_Tyr_Ser-Thr

Pkinase_fungal

PF00069 Pkinase 10-227 aa PF07714 PK_Tyr_Ser-Thr 10-269 aa PF17667 Pkinase_fungal 110-206 aa

XP_057781504.1

368 aa

184

368

PK_Tyr_Ser-Thr

Pkinase

Pkinase_fungal

PF07714 PK_Tyr_Ser-Thr 9-190 aa PF00069 Pkinase 12-148 aa PF17667 Pkinase_fungal 31-127 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781503.1`	Pfam	`PF00069`	Pkinase	Domain	10	227	2.9e-24	86.6	Protein kinase domain
`XP_057781503.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	10	269	2.1e-13	50.9	Protein tyrosine and serine/threonine kinase
`XP_057781503.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	110	206	2.2e-08	34.0	Fungal protein kinase
`XP_057781504.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	9	190	1.2e-07	32.0	Protein tyrosine and serine/threonine kinase
`XP_057781504.1`	Pfam	`PF00069`	Pkinase	Domain	12	148	6.2e-17	62.6	Protein kinase domain
`XP_057781504.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	31	127	1.6e-08	34.4	Fungal protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925520.1
AATTAAAGACGTGAAGAACGTATATTTTCAGCCACTTCACCTTCTCCCTTTGCTCCTCTGTATGCCCATATTTCCTCTGCAACTCCCTCTCTCTCTCTCTCTCATTTCCCACCTTCCATTTCCGAGTCCCCTTTTAATAGTATATCAATTCAAAATTTACACACGGCACACCCCATTTCCATCCAACAATTTTTTAGCTGCCTCGAAAAATAAAAACAATTTTCCCATCATCAAATTTTTTCGCCCCACCATGCAAAACG...

XM_057925521.1
ATTCAGGAACACATGTACAAACTGGTGAAGAAGTGGCCGTGAAGCTGGAATCTGTTAAGACTAAACATCCTCAGCTTTACTATGAATCGAAGTTGTATATGCTTCTTCGAGGCGGAATTTGTTTTGTGAAGCTGGGGTTCCCGAGCTCAGATGGTTCGGAGTTGAAGGTGAGTACAATGCCATGGTTATCGACCTTCTCGGGCCGAGCTTGGAAGATTTGTTTAACTATTGCAATAGGAAGTTCTCACTGAAAACAGTTC...

CDS

2 records

下载 CDS FASTA

LOC130999847
ATGGATCACGTCATTGGAGGAAAGTTTAAGCTGGGGAGGAAGATTGGTGGGGGATCCTTTGGGGAGCTTTATTTGGGAACACATGTACAAACTGGTGAAGAAGTGGCCGTGAAGCTGGAATCTGTTAAGACTAAACATCCTCAGCTTTACTATGAATCGAAGTTGTATATGCTTCTTCGAGGCGGAACTGGGGTTCCCGAGCTCAGATGGTTCGGAGTTGAAGGTGAGTACAATGCCATGGTTATCGACCTTCTCGGGCC...

LOC130999847
ATGGTTATCGACCTTCTCGGGCCGAGCTTGGAAGATTTGTTTAACTATTGCAATAGGAAGTTCTCACTGAAAACAGTTCTCATGCTTGCTGATCAATTGATTAATAGAGTGGAGTTCATGCACTCGAGAGGCTTTCTTCACCGTGATATAAAGCCGGATAACTTCTTAATGGGCTTGGGACGCAAAGCGAATCAGGTGTACATTATTGATTATGGACTTGCAAAGAAATACAGAGATCTTAATTCTCACAGGCACATACC...

Protein

2 records

下载 Protein FASTA

XP_057781503.1
MDHVIGGKFKLGRKIGGGSFGELYLGTHVQTGEEVAVKLESVKTKHPQLYYESKLYMLLRGGTGVPELRWFGVEGEYNAMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEFMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLNSHRHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPMEVLCKSYPSEFLSYFHYCRSLRF...

XP_057781504.1
MVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEFMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLNSHRHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPMEVLCKSYPSEFLSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRPTGKPPTNAGPSSERVEKTPVKQEVRERLSGAVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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