当前解析结果
SmilChr08G000257| 统一新 Gene ID | SmilChr08G000257 |
|---|---|
| 名称 | SmilChr08G000257 |
| 描述 | uncharacterized SmilChr08G000257 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1777540 - 1783517 / - |
| NCBI Gene ID | LOC130999850 |
|---|---|
| GeneID | 130999850 |
| locus_tag | - |
| NCBI Name | LOC130999850 |
| 原始查询 | SmilChr08G000257 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827078]; symbol=AT4G14350; hit=AT4G14350; species=arabidopsis; confidence=high |
| 产物 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827078]; symbol=AT4G14350; hit=AT4G14350; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G14350 (AT4G14350)AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827078] identity=81.1; qcov=0.987; evalue=0; confidence=high |
| Rice | Os05g0511400- identity=75.4; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00433 (Pkinase_C); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999850 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781506.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057781506.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057781506.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057781506.1 |
| 5 | Cell projection | 细胞突起 | 0.20000 | XP_057781506.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1777930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:1777988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr8:1779040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:1779551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,C16,C33 |
Chr8:1779889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,C11,C69 |
Chr8:1780193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:1780196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr8:1780630 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,C16,C33 |
Chr8:1780648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B68,B80,C58,C71,C80 |
Chr8:1780699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:1780780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B88,C17,C4 |
Chr8:1781072 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781506.1PF00069
Pkinase 121-271 aa
PF07714
PK_Tyr_Ser-Thr 123-268 aa
PF03109
ABC1 193-269 aa
PF00069
Pkinase 315-418 aa
PF00433
Pkinase_C 437-481 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781506.1 |
Pfam | PF00069 |
Pkinase | Domain | 121 | 271 | 4.4e-66 | 223.7 | Protein kinase domain |
XP_057781506.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 123 | 268 | 9.2e-30 | 104.5 | Protein tyrosine and serine/threonine kinase |
XP_057781506.1 |
Pfam | PF03109 |
ABC1 | Domain | 193 | 269 | 3.1e-06 | 27.2 | ABC1 atypical kinase-like domain |
XP_057781506.1 |
Pfam | PF00069 |
Pkinase | Domain | 315 | 418 | 4.4e-66 | 223.7 | Protein kinase domain |
XP_057781506.1 |
Pfam | PF00433 |
Pkinase_C | Family | 437 | 481 | 1.3e-07 | 32.9 | Protein kinase C terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。