Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000264

染色体: Chr08 坐标: 1813566-1815410 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000264
名称SmilChr08G000264
描述uncharacterized SmilChr08G000264
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向1813566 - 1815410 / +

ID 对照

NCBI Gene IDLOC130999858
GeneID130999858
locus_tag-
NCBI NameLOC130999858
原始查询SmilChr08G000264

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述FK506-binding nuclear-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817904]; symbol=AT2G33400; hit=AT2G33400; species=arabidopsis; confidence=low
产物FK506-binding nuclear-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817904]; symbol=AT2G33400; hit=AT2G33400; species=arabidopsis; confidence=low
ArabidopsisAT2G33400 (AT2G33400)
FK506-binding nuclear-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817904]
identity=29.4; qcov=1.07; evalue=5.35e-15; confidence=low
RiceOs04g0511700
-
identity=26.4; qcov=0.943; evalue=5.99e-08; confidence=low
GOGO:0007142 (male meiosis II)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130999858

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057781520.1
2 Nucleus 细胞核 0.40000 XP_057781520.1
3 Cytoplasm 细胞质 0.20000 XP_057781520.1
4 Chromosome 染色体 0.00000 XP_057781520.1
5 Centromere 着丝粒 0.00000 XP_057781520.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:1813635 A ATG 2bp_insertion frameshift_variant 17 A1,A7,B1,B100,B110,B125,B140,B15,B25,B27,B42,B43,B93,C41,C42,C6,C81
Chr8:1813650 A AAC 2bp_insertion frameshift_variant 19 A25,A4,B11,B112,B123,B133,B137,B17,B19,B22,B86,B9,C18,C22,C26,C46,C70,C74,D9
Chr8:1813676 T TCC 2bp_insertion frameshift_variant 56 A15,A19,A24,A25,A4,A5,B11,B112,B12,B121,B123,B126,B128,B129,B133,B137,B17,B19,B21,B22,B26,B28,B32,B34,B38,B39,B4,B45,B49,B57,B6,B62,B76,B81,B82,B86,B9,B91,B94,C17,C18,C20,C22,C26,C28,C3,C30,C35,C46,C5,C51,C67,C70,C74,C9,D9
Chr8:1813820 G A EMS_canonical_SNV CDS_variant 4 A15,B18,C14,C75
Chr8:1814554 G A EMS_canonical_SNV CDS_variant 1 B136
Chr8:1814581 C T EMS_canonical_SNV CDS_variant 2 B79,D3
Chr8:1814587 GA G 1bp_deletion frameshift_variant 1 A5
Chr8:1814587 GA G 1bp_deletion CDS_variant 1 A5
Chr8:1814614 G A EMS_canonical_SNV CDS_variant 1 B102
Chr8:1814625 C T EMS_canonical_SNV CDS_variant 1 B44
Chr8:1814626 G A EMS_canonical_SNV CDS_variant 4 A14,B8,C2,C80
Chr8:1814641 C T EMS_canonical_SNV CDS_variant 1 B55

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925537.1
ACACACACACACATTAACACACTCACATTAGATTAGATATGGGATGCTTTCTTGCATGCTTTGGATTCAAAGAGAAGAAGAAGAAGAAACTCTGCAACAAAAACTCCTCTTTTGTGGAACAACACAACCAAGGCTACGTGCCTCTTGATTCAGATACATCTCAGCTCAAGGAGAAGCCATCATCAATATCGAAACTCAAAAAGAAAGTGAGGTTTAACCTAAATGTGAAGGCTTACGAAGCGATTTCACATGAAGTCGCC...

CDS

1 records

下载 CDS FASTA
LOC130999858
ATGGGATGCTTTCTTGCATGCTTTGGATTCAAAGAGAAGAAGAAGAAGAAACTCTGCAACAAAAACTCCTCTTTTGTGGAACAACACAACCAAGGCTACGTGCCTCTTGATTCAGATACATCTCAGCTCAAGGAGAAGCCATCATCAATATCGAAACTCAAAAAGAAAGTGAGGTTTAACCTAAATGTGAAGGCTTACGAAGCGATTTCACATGAAGTCGCCTCGTATCTTTCAGAGGAAGAAGAAGAAGAAGAAGAAGA...

Protein

1 records

下载 Protein FASTA
XP_057781520.1
MGCFLACFGFKEKKKKKLCNKNSSFVEQHNQGYVPLDSDTSQLKEKPSSISKLKKKVRFNLNVKAYEAISHEVASYLSEEEEEEEEEANNTAGSLHYEEDAIASYPASYRYQNCRYSDDEEDEDEYIELDESENELDEDDVSSIYDDDDDVTKNIEVQTTESRSNPQRYDSSVLTPIENLSQWREIKAKAKTEDLKMHKENSNISTMDSHQFESKLRVNNVISVDTSLANWLSSLEKNPLINSGL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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