当前解析结果
SmilChr08G000278| 统一新 Gene ID | SmilChr08G000278 |
|---|---|
| 名称 | SmilChr08G000278 |
| 描述 | flowering time control protein FPA |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1896144 - 1905762 / - |
| NCBI Gene ID | LOC130999866 |
|---|---|
| GeneID | 130999866 |
| locus_tag | - |
| NCBI Name | LOC130999866 |
| 原始查询 | SmilChr08G000278 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | flowering time control protein FPA |
| 产物 | flowering time control protein FPA |
| Arabidopsis | AT2G43410 (FPA)RNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:818942] identity=40; qcov=0.992; evalue=0; confidence=medium |
| Rice | Os09g0516300 (OsRRMh)- identity=37.1; qcov=0.804; evalue=2.67e-121; confidence=medium |
| GO | GO:0003723 (RNA binding) |
| KEGG | - |
| Pfam | PF00076 (RRM_1); PF07744 (SPOC); PF13893 (RRM_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999866 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781531.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057781531.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057781531.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781531.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781531.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1899539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C51 |
Chr8:1899612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C51 |
Chr8:1899687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr8:1899818 |
TAC |
T |
2bp_deletion | frameshift_variant | 1 | B87 |
Chr8:1899818 |
TAC |
T |
2bp_deletion | CDS_variant | 1 | B87 |
Chr8:1899942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr8:1899968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,B42,B43 |
Chr8:1899976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr8:1900135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:1900305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr8:1900309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr8:1900456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781531.1PF00076
RRM_1 27-90 aa
PF00076
RRM_1 104-167 aa
PF13893
RRM_5 244-299 aa
PF00076
RRM_1 246-298 aa
PF07744
SPOC 483-607 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781531.1 |
Pfam | PF00076 |
RRM_1 | Domain | 27 | 90 | 6.1e-39 | 132.4 | RNA recognition motif |
XP_057781531.1 |
Pfam | PF00076 |
RRM_1 | Domain | 104 | 167 | 6.1e-39 | 132.4 | RNA recognition motif |
XP_057781531.1 |
Pfam | PF13893 |
RRM_5 | Domain | 244 | 299 | 2.1e-08 | 34.6 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
XP_057781531.1 |
Pfam | PF00076 |
RRM_1 | Domain | 246 | 298 | 6.1e-39 | 132.4 | RNA recognition motif |
XP_057781531.1 |
Pfam | PF07744 |
SPOC | Domain | 483 | 607 | 3.2e-24 | 86.3 | SPOC domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。