当前解析结果
SmilChr08G000286| 统一新 Gene ID | SmilChr08G000286 |
|---|---|
| 名称 | SmilChr08G000286 |
| 描述 | electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1947392 - 1953179 / - |
| NCBI Gene ID | LOC130999875 |
|---|---|
| GeneID | 130999875 |
| locus_tag | - |
| NCBI Name | LOC130999875 |
| 原始查询 | SmilChr08G000286 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial |
| 产物 | electron transfer flavoprotein-ubiquinone oxidoreductase%2C mitochondrial |
| Arabidopsis | AT2G43400 (ETFQO)electron-transfer flavoprotein:ubiquinone oxidoreductase [Source:NCBI gene (formerly Entrezgene);Acc:818941] identity=77; qcov=0.919; evalue=0; confidence=high |
| Rice | Os10g0516300- identity=79.3; qcov=0.185; evalue=2.84e-62; confidence=weak |
| GO | GO:0004174 (electron-transferring-flavoprotein dehydrogenase activity); GO:0005743 (mitochondrial inner membrane); GO:0022900 (electron transport chain); GO:0051536 (iron-sulfur cluster binding) |
| KEGG | - |
| Pfam | PF00890 (FAD_binding_2); PF05187 (Fer4_ETF_QO); PF13450 (NAD_binding_8); PF21162 (ETFQO_UQ-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999875 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057781543.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.80000 | XP_057781543.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.80000 | XP_057781543.1 |
| 4 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057781543.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057781543.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1947672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B90,B92,C53 |
Chr8:1947974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr8:1947975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B41,B52,B79,C23,D3 |
Chr8:1948074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,C51,C82 |
Chr8:1948081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B126,B57,B8,C31,C80 |
Chr8:1948140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,D11 |
Chr8:1948147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:1948177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B90,B92,C53 |
Chr8:1948187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr8:1948301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr8:1948335 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C10 |
Chr8:1948805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781543.1PF00890
FAD_binding_2 96-139 aa
PF13450
NAD_binding_8 99-144 aa
PF21162
ETFQO_UQ-bd 295-388 aa
PF05187
Fer4_ETF_QO 524-626 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781543.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 96 | 139 | 9.9e-06 | 25.7 | FAD binding domain |
XP_057781543.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 99 | 144 | 1.6e-07 | 32.2 | NAD(P)-binding Rossmann-like domain |
XP_057781543.1 |
Pfam | PF21162 |
ETFQO_UQ-bd | Domain | 295 | 388 | 4.2e-43 | 146.5 | ETF-QO, ubiquinone-binding |
XP_057781543.1 |
Pfam | PF05187 |
Fer4_ETF_QO | Family | 524 | 626 | 1e-45 | 154.9 | Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。