Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000290`

染色体: Chr08 坐标: 1989591-1992785 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000290`
名称	SmilChr08G000290
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1989591 - 1992785 / `-`

ID 对照

NCBI Gene ID	`LOC130999880`
GeneID	`130999880`
locus_tag	`-`
NCBI Name	`LOC130999880`
原始查询	`SmilChr08G000290`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT3G07040` (RPM1) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:819889] identity=24.8; qcov=0.749; evalue=9.55e-17; confidence=weak
Rice	`Os11g0258500` - identity=25.6; qcov=0.818; evalue=5.27e-27; confidence=low
GO	GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130999880

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781550.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781550.1`
3	Nucleus	细胞核	0.00000	`XP_057781552.1`
4	Chromosome	染色体	0.00000	`XP_057781552.1`
5	Centromere	着丝粒	0.00000	`XP_057781552.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1992160`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr8:1992266`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr8:1992306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:1992309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B120,B85,C7
`Chr8:1992325`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	A19
`Chr8:1992325`	`GCC`	`G`	2bp_deletion	CDS_variant	1	A19
`Chr8:1992327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B120,B85
`Chr8:1992328`	`G`	`GTC`	2bp_insertion	frameshift_variant	1	A19
`Chr8:1992328`	`G`	`GTC`	2bp_insertion	CDS_variant	1	A19
`Chr8:1992494`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr8:1992499`	`TG`	`T`	1bp_deletion	frameshift_variant	7	B101,B108,B48,B49,B76,B84,C9
`Chr8:1992510`	`A`	`AG`	1bp_insertion	frameshift_variant	7	B101,B108,B48,B49,B76,B84,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781550.1

684 aa

342

684

WHD_DRP

LRR_14

PF23559 WHD_DRP 159-219 aa PF23598 LRR_14 308-590 aa

XP_057781552.1

550 aa

275

550

WHD_DRP

LRR_14

PF23559 WHD_DRP 159-219 aa PF23598 LRR_14 308-545 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781550.1`	Pfam	`PF23559`	WHD_DRP	Domain	159	219	3.7e-09	37.2	Disease resistance protein Winged helix domain
`XP_057781550.1`	Pfam	`PF23598`	LRR_14	Repeat	308	590	1.7e-32	113.3	Leucine-rich repeat region
`XP_057781552.1`	Pfam	`PF23559`	WHD_DRP	Domain	159	219	3.7e-09	37.2	Disease resistance protein Winged helix domain
`XP_057781552.1`	Pfam	`PF23598`	LRR_14	Repeat	308	545	1e-28	100.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925567.1
ATAAGAAACAAGTCCTACCTATCAGGCAAGAGAGAGAGAGAGGGGAGAGAGAAAGGAAGAAAAACTTGAGGTAACTCAGCAATGGCGGATGCAGTGGTGGTTTCCTCCGTATTGATTGAACAATTTTCAGACTCAGTTTGCGGCTACATAAAACAACTGACCCAAGGACACTATGTAGTAGGGCGAATCCAATACGAATTGGAGACGCTTATACCCCAGTTGGAAAGGATCGAAGCCGGGCCTGGGCTCTCCATAGAAAC...

XM_057925569.1
GAAAATAAGAAACAAGTCCTACCTATCAGGCAAGAGAGAGAGAGAGGGGAGAGAGAAAGGAAGAAAAACTTGAGGTAACTCAGCAATGGCGGATGCAGTGGTGGTTTCCTCCGTATTGATTGAACAATTTTCAGACTCAGTTTGCGGCTACATAAAACAACTGACCCAAGGACACTATGTAGTAGGGCGAATCCAATACGAATTGGAGACGCTTATACCCCAGTTGGAAAGGATCGAAGCCGGGCCTGGGCTCTCCATAG...

CDS

2 records

下载 CDS FASTA

LOC130999880
ATGGCGGATGCAGTGGTGGTTTCCTCCGTATTGATTGAACAATTTTCAGACTCAGTTTGCGGCTACATAAAACAACTGACCCAAGGACACTATGTAGTAGGGCGAATCCAATACGAATTGGAGACGCTTATACCCCAGTTGGAAAGGATCGAAGCCGGGCCTGGGCTCTCCATAGAAACCGAGGAGTTGATTGCAATTATCAGAGACGTGATCCGCAAAGCAGAAGACCTGACAGAGATTCACACCAAGAGGGAGATACA...

Protein

2 records

下载 Protein FASTA

XP_057781550.1
MADAVVVSSVLIEQFSDSVCGYIKQLTQGHYVVGRIQYELETLIPQLERIEAGPGLSIETEELIAIIRDVIRKAEDLTEIHTKREIQRDAATFKALIYELKILRISKQLHGVDEDISRYRIQLSRQLHRESRMPGFAAAAAEEQSIPSYLRRCMRYLILFPPGFLVRTRRLIALWVAEGLVGEEFVEQTAENYLNELIALRVLLPTSRKRNGKVKVCKIDAGRREAMLQEAEKSNFLKDRNGKILRLVDDHNEAAESNGD...

XP_057781552.1
MADAVVVSSVLIEQFSDSVCGYIKQLTQGHYVVGRIQYELETLIPQLERIEAGPGLSIETEELIAIIRDVIRKAEDLTEIHTKREIQRDAATFKALIYELKILRISKQLHGVDEDISRYRIQLSRQLHRESRMPGFAAAAAEEQSIPSYLRRCMRYLILFPPGFLVRTRRLIALWVAEGLVGEEFVEQTAENYLNELIALRVLLPTSRKRNGKVKVCKIDAGRREAMLQEAEKSNFLKDRNGKILRLVDDHNEAAESNGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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