当前解析结果
SmilChr08G000291| 统一新 Gene ID | SmilChr08G000291 |
|---|---|
| 名称 | SmilChr08G000291 |
| 描述 | putative disease resistance RPP13-like protein 3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1993391 - 1997810 / + |
| NCBI Gene ID | LOC130999881 |
|---|---|
| GeneID | 130999881 |
| locus_tag | - |
| NCBI Name | LOC130999881 |
| 原始查询 | SmilChr08G000291 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance RPP13-like protein 3 |
| 产物 | putative disease resistance RPP13-like protein 3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27; qcov=1.07; evalue=2.6e-60; confidence=low |
| Rice | Os12g0500500- identity=26.7; qcov=0.988; evalue=1.41e-56; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999881 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781553.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781553.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781553.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781553.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781553.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1993578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr8:1993723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,C64,C66 |
Chr8:1993871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C16 |
Chr8:1995401 |
AC |
A |
1bp_deletion | frameshift_variant | 4 | B128,B33,C45,C71 |
Chr8:1995401 |
AC |
A |
1bp_deletion | CDS_variant | 4 | B128,B33,C45,C71 |
Chr8:1995414 |
G |
GT |
1bp_insertion | stop_gained,frameshift_variant | 3 | B100,B108,C40 |
Chr8:1995414 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B100,B108,C40 |
Chr8:1995440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B108,C40 |
Chr8:1995465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr8:1995470 |
A |
ATG |
2bp_insertion | frameshift_variant | 7 | B100,B46,B68,C19,C40,C49,C55 |
Chr8:1995477 |
GGA |
G |
2bp_deletion | frameshift_variant | 20 | A2,A22,A4,B11,B112,B113,B128,B137,B17,B33,B36,B84,C15,C19,C39,C45,C71,C87,D11,D6 |
Chr8:1995481 |
G |
GAC |
2bp_insertion | frameshift_variant | 21 | A2,A22,A4,B11,B112,B113,B128,B137,B17,B25,B33,B36,B84,C15,C19,C39,C45,C71,C87,D11,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781553.1PF00931
NB-ARC 165-317 aa
PF23559
WHD_DRP 410-493 aa
PF23598
LRR_14 570-744 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781553.1 |
Pfam | PF00931 |
NB-ARC | Domain | 165 | 317 | 2.2e-23 | 83.4 | NB-ARC domain |
XP_057781553.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 410 | 493 | 1.9e-14 | 54.2 | Disease resistance protein Winged helix domain |
XP_057781553.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 570 | 744 | 6.8e-16 | 58.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。