当前解析结果
SmilChr08G000296| 统一新 Gene ID | SmilChr08G000296 |
|---|---|
| 名称 | SmilChr08G000296 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2038445 - 2042436 / + |
| NCBI Gene ID | LOC130999887 |
|---|---|
| GeneID | 130999887 |
| locus_tag | - |
| NCBI Name | LOC130999887 |
| 原始查询 | SmilChr08G000296 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=25.4; qcov=1.01; evalue=4.94e-56; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=24.6; qcov=0.63; evalue=5.17e-42; confidence=weak |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999887 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781560.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057781560.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781560.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781560.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781560.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2038463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B28 |
Chr8:2038472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C75 |
Chr8:2038480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr8:2038508 |
TCC |
T |
2bp_deletion | frameshift_variant | 7 | A14,B104,B33,B85,C56,C68,C76 |
Chr8:2038515 |
CTT |
C |
2bp_deletion | frameshift_variant | 9 | A14,B104,B33,B85,C56,C66,C68,C76,C82 |
Chr8:2038560 |
GA |
G |
1bp_deletion | frameshift_variant | 17 | A14,B104,B13,B33,B55,B70,B78,B79,B88,B90,C56,C64,C66,C68,C76,C82,D5 |
Chr8:2038563 |
T |
TC |
1bp_insertion | frameshift_variant | 20 | A14,B104,B13,B18,B33,B55,B70,B78,B79,B85,B88,B90,C42,C56,C64,C66,C68,C76,C82,D5 |
Chr8:2038565 |
AG |
A |
1bp_deletion | frameshift_variant | 20 | A14,B104,B13,B18,B33,B55,B70,B78,B79,B85,B88,B90,C42,C56,C64,C66,C68,C76,C82,D5 |
Chr8:2038569 |
C |
CTG |
2bp_insertion | frameshift_variant | 17 | A14,B104,B13,B33,B55,B70,B78,B79,B88,B90,C56,C64,C66,C68,C76,C82,D5 |
Chr8:2038571 |
GCA |
G |
2bp_deletion | frameshift_variant | 3 | B18,B85,C42 |
Chr8:2038571 |
GCA |
G |
2bp_deletion | CDS_variant | 3 | B18,B85,C42 |
Chr8:2038586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B136,B20,B70,B90,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781560.1PF00931
NB-ARC 177-365 aa
PF23559
WHD_DRP 462-530 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781560.1 |
Pfam | PF00931 |
NB-ARC | Domain | 177 | 365 | 2.2e-27 | 96.5 | NB-ARC domain |
XP_057781560.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 462 | 530 | 2.9e-14 | 53.5 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。