Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000298`

染色体: Chr08 坐标: 2054862-2061700 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000298`
名称	SmilChr08G000298
描述	putative disease resistance protein RGA4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2054862 - 2061700 / `+`

ID 对照

NCBI Gene ID	`LOC130999889`
GeneID	`130999889`
locus_tag	`-`
NCBI Name	`LOC130999889`
原始查询	`SmilChr08G000298`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA4
产物	putative disease resistance protein RGA4
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=29.9; qcov=0.867; evalue=1.91e-109; confidence=low
Rice	`Os05g0492200` (YR1) - identity=30.6; qcov=0.926; evalue=1.87e-117; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF24883 (NPHP3_N); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999889

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781563.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781563.1`
3	Nucleus	细胞核	0.00000	`XP_057781563.1`
4	Chromosome	染色体	0.00000	`XP_057781563.1`
5	Centromere	着丝粒	0.00000	`XP_057781563.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2055051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B18,B85
`Chr8:2055266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B70,C64,C66,C76,C82
`Chr8:2055402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,C40,C43,C56
`Chr8:2055539`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B75,C1,C44,C72
`Chr8:2055616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr8:2055762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:2055904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr8:2056249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,B85
`Chr8:2056610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:2056885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C20,C22,C7
`Chr8:2056912`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B104,B140
`Chr8:2056912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781563.1

1218 aa

609

1218

Rx_N

NB-ARC

NPHP3_N

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-95 aa PF00931 NB-ARC 179-343 aa PF24883 NPHP3_N 188-271 aa PF13401 AAA_22 195-292 aa PF23559 WHD_DRP 429-499 aa PF23598 LRR_14 541-831 aa PF25019 LRR_R13L1-DRL21 669-799 aa

XP_057781564.1

1218 aa

609

1218

Rx_N

NB-ARC

NPHP3_N

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781563.1`	Pfam	`PF18052`	Rx_N	Domain	9	95	1.4e-17	64.3	Rx N-terminal domain
`XP_057781563.1`	Pfam	`PF00931`	NB-ARC	Domain	179	343	3.6e-33	115.3	NB-ARC domain
`XP_057781563.1`	Pfam	`PF24883`	NPHP3_N	Domain	188	271	9.5e-06	26.6	Nephrocystin 3, N-terminal
`XP_057781563.1`	Pfam	`PF13401`	AAA_22	Domain	195	292	5.2e-07	30.7	AAA domain
`XP_057781563.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	499	2.6e-21	76.1	Disease resistance protein Winged helix domain
`XP_057781563.1`	Pfam	`PF23598`	LRR_14	Repeat	541	831	8.2e-41	140.6	Leucine-rich repeat region
`XP_057781563.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	669	799	1.8e-42	145.0	R13L1/DRL21 LRRs
`XP_057781564.1`	Pfam	`PF18052`	Rx_N	Domain	9	95	1.4e-17	64.3	Rx N-terminal domain
`XP_057781564.1`	Pfam	`PF00931`	NB-ARC	Domain	179	343	3.6e-33	115.3	NB-ARC domain
`XP_057781564.1`	Pfam	`PF24883`	NPHP3_N	Domain	188	271	9.5e-06	26.6	Nephrocystin 3, N-terminal
`XP_057781564.1`	Pfam	`PF13401`	AAA_22	Domain	195	292	5.2e-07	30.7	AAA domain
`XP_057781564.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	499	2.6e-21	76.1	Disease resistance protein Winged helix domain
`XP_057781564.1`	Pfam	`PF23598`	LRR_14	Repeat	541	831	8.2e-41	140.6	Leucine-rich repeat region
`XP_057781564.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	669	799	1.8e-42	145.0	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925581.1
GCACCAACTCTCCCCCTCTCTCTCTCTGTCAATCTCATCTACACACAGAGCATTGAGAATTATCAGCAACTCCCTCTCTCAAAGCACCGAAAGAATGGAAGGAGATGCTGTTGCCGCCGTTCTTCAAGTTCTAGTTCAAAACCTCATCGACCACTCCAAAAACGAGATCGCTCTCATCCGAGGTCTCGACAAAGAAGCAGCAAAGCTAGCTGAGAGACTGGATGCCCTCCAGCAATACTTGAACGACGCAGAGGCGGGTA...

XM_057925580.1
GCACCAACTCTCCCCCTCTCTCTCTCTGTCAATCTCATCTACACACAGAGCATTGAGAATTATCAGCAACTCCCTCTCTCAAAGCACCGAAAGAATGGAAGGAGATGCTGTTGCCGCCGTTCTTCAAGTTCTAGTTCAAAACCTCATCGACCACTCCAAAAACGAGATCGCTCTCATCCGAGGTCTCGACAAAGAAGCAGCAAAGCTAGCTGAGAGACTGGATGCCCTCCAGCAATACTTGAACGACGCAGAGGCGGGTA...

CDS

2 records

下载 CDS FASTA

LOC130999889
ATGGAAGGAGATGCTGTTGCCGCCGTTCTTCAAGTTCTAGTTCAAAACCTCATCGACCACTCCAAAAACGAGATCGCTCTCATCCGAGGTCTCGACAAAGAAGCAGCAAAGCTAGCTGAGAGACTGGATGCCCTCCAGCAATACTTGAACGACGCAGAGGCGGGTAACATCACCGGCAATGCAGTCAAAAACTGGCTGAGCAGGCTTGAAAACGTGGCGTTCGATGCTGACAATGTTTTGGATGAGCTCAACTATCATCA...

Protein

2 records

下载 Protein FASTA

XP_057781563.1
MEGDAVAAVLQVLVQNLIDHSKNEIALIRGLDKEAAKLAERLDALQQYLNDAEAGNITGNAVKNWLSRLENVAFDADNVLDELNYHHLSKDIKHNKPMKEKVLSFFSSFNSVVRPRNMAFRIQEINVSLDSLDNEAARLGLMKRPASGEPTLDDTVNFETDAFTSIPIFIGREVVMSEIVEMLATSIKTDQRPISILTIVGMGGLGKTTLTRKVFDHMKTEKRLFGSHIWVHVSQKFDLITLLKKILKELTTEVAETKQD...

XP_057781564.1
MEGDAVAAVLQVLVQNLIDHSKNEIALIRGLDKEAAKLAERLDALQQYLNDAEAGNITGNAVKNWLSRLENVAFDADNVLDELNYHHLSKDIKHNKPMKEKVLSFFSSFNSVVRPRNMAFRIQEINVSLDSLDNEAARLGLMKRPASGEPTLDDTVNFETDAFTSIPIFIGREVVMSEIVEMLATSIKTDQRPISILTIVGMGGLGKTTLTRKVFDHMKTEKRLFGSHIWVHVSQKFDLITLLKKILKELTTEVAETKQD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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