Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000302

染色体: Chr08 坐标: 2114067-2118010 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000302
名称SmilChr08G000302
描述fructokinase-2-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向2114067 - 2118010 / -

ID 对照

NCBI Gene IDLOC130999892
GeneID130999892
locus_tag-
NCBI NameLOC130999892
原始查询SmilChr08G000302

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述fructokinase-2-like
产物fructokinase-2-like
ArabidopsisAT3G59480 (AT3G59480)
pfkB-like carbohydrate kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825117]
identity=77.2; qcov=0.994; evalue=0; confidence=high
RiceOs01g0894300 (OsFKI)
-
identity=70.2; qcov=0.969; evalue=2.22e-167; confidence=high
GOGO:0005829 (cytosol); GO:0006000 (fructose metabolic process); GO:0008865 (fructokinase activity)
KEGGsmil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
PfamPF00294 (PfkB)
InterPro-
eggNOG-
NRGeneID:130999892

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057781566.1
2 Cytosol 细胞质基质 1.00000 XP_057781566.1
3 Nucleus 细胞核 0.20000 XP_057781566.1
4 Nucleoplasm 核质 0.20000 XP_057781566.1
5 Chromosome 染色体 0.00000 XP_057781566.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:2114287 C T EMS_canonical_SNV CDS_variant 2 B90,B92
Chr8:2114298 C T EMS_canonical_SNV CDS_variant 2 B26,B72
Chr8:2114325 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:2114350 G A EMS_canonical_SNV CDS_variant 1 B25
Chr8:2114681 G A EMS_canonical_SNV CDS_variant 2 B100,B35
Chr8:2115259 G A EMS_canonical_SNV CDS_variant 3 B30,C56,C65
Chr8:2115268 G A EMS_canonical_SNV CDS_variant 5 B70,C64,C66,C76,D11
Chr8:2115301 C T EMS_canonical_SNV CDS_variant 2 C24,C41
Chr8:2115437 G A EMS_canonical_SNV CDS_variant 2 B123,C82
Chr8:2115442 C T EMS_canonical_SNV CDS_variant 3 B26,B72,D10
Chr8:2115469 G A EMS_canonical_SNV CDS_variant 1 A21
Chr8:2115505 C T EMS_canonical_SNV CDS_variant 5 B70,C64,C66,C76,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057781566.1
326 aa
N
1
163
326
PfkB
C
PF00294 PfkB 10-313 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781566.1 Pfam PF00294 PfkB Domain 10 313 8.5e-75 252.6 pfkB family carbohydrate kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925583.1
TATTTAATATTCAGTGGATTATCCATCATTTTCGCCACCCAATCAATTAACAACCAAAAAAATTAAATAAATCCATTTAACAATAAATAATCTTGTTTTTATCTAAACCACAATTACTACACATACTCGAAATCCCAATTTCCCTCTTCTATATAAACACTTCTCTCACTTCACTTTCTCTCATCTCATTCTCTGCTGAAAATACACACACAAATTACACACAGTTACGTACACTCTCTCTCTCTCGCTCTCTATATATA...

CDS

1 records

下载 CDS FASTA
LOC130999892
ATGGCGAATTCAGGCGCCGGCCAAGGACTGGTCGTGTGCTTCGGCGAGATGCTGATCGATTTCGTGCCGACGGTCTCCGGCGTGTCGCTGGCGGAGGCGCCGGGGTTCCTCAAGGCCCCCGGCGGCGCCCCCGCCAACGTCTCGATCGCCATCACCAGGCTCGGCGGGAAGTCGGCGTTCGTCGGGAAGCTCGGGGACGACGAGTTCGGCCAGATGCTCGCCGGAATCCTCAAGGAGAACAAGGTCTCCGCCGACGGTGT...

Protein

1 records

下载 Protein FASTA
XP_057781566.1
MANSGAGQGLVVCFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVSIAITRLGGKSAFVGKLGDDEFGQMLAGILKENKVSADGVCFDKGARTALAFVTLRADGDREFMFYRNPSADMLLKPEELNLNLIKSAKIFHYGSISLIVEPCRSAHMKAMEEAKKAGALLSYDPNLRLPLWPSAEYAKEQIMSIWNKADLIKVSDNELEFLTGKITDESAMSLWHPNLKLLLVTLGEKGCKYYAKNFKGCVPGYSVKAVDTT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器