当前解析结果
SmilChr08G000302| 统一新 Gene ID | SmilChr08G000302 |
|---|---|
| 名称 | SmilChr08G000302 |
| 描述 | fructokinase-2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2114067 - 2118010 / - |
| NCBI Gene ID | LOC130999892 |
|---|---|
| GeneID | 130999892 |
| locus_tag | - |
| NCBI Name | LOC130999892 |
| 原始查询 | SmilChr08G000302 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fructokinase-2-like |
| 产物 | fructokinase-2-like |
| Arabidopsis | AT3G59480 (AT3G59480)pfkB-like carbohydrate kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825117] identity=77.2; qcov=0.994; evalue=0; confidence=high |
| Rice | Os01g0894300 (OsFKI)- identity=70.2; qcov=0.969; evalue=2.22e-167; confidence=high |
| GO | GO:0005829 (cytosol); GO:0006000 (fructose metabolic process); GO:0008865 (fructokinase activity) |
| KEGG | smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00294 (PfkB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999892 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057781566.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057781566.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057781566.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057781566.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781566.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2114287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr8:2114298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,B72 |
Chr8:2114325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:2114350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr8:2114681 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B35 |
Chr8:2115259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,C56,C65 |
Chr8:2115268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B70,C64,C66,C76,D11 |
Chr8:2115301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C24,C41 |
Chr8:2115437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,C82 |
Chr8:2115442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B72,D10 |
Chr8:2115469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr8:2115505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B70,C64,C66,C76,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781566.1PF00294
PfkB 10-313 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781566.1 |
Pfam | PF00294 |
PfkB | Domain | 10 | 313 | 8.5e-75 | 252.6 | pfkB family carbohydrate kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。