Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000304`

染色体: Chr08 坐标: 2128083-2150870 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000304`
名称	SmilChr08G000304
描述	uncharacterized SmilChr08G000304
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2128083 - 2150870 / `-`

ID 对照

NCBI Gene ID	`LOC130999895`
GeneID	`130999895`
locus_tag	`-`
NCBI Name	`LOC130999895`
原始查询	`SmilChr08G000304`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os04g0599650; species=rice; confidence=medium
产物	hit=Os04g0599650; species=rice; confidence=medium
Arabidopsis	`AT1G65810` (AT1G65810) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842892] identity=38.1; qcov=0.359; evalue=0; confidence=low
Rice	`Os04g0599650` - identity=39.7; qcov=0.687; evalue=0; confidence=medium
GO	GO:0004386 (helicase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0016787 (hydrolase activity)
KEGG	-
Pfam	PF00580 (UvrD-helicase); PF13086 (AAA_11); PF13087 (AAA_12); PF13245 (AAA_19); PF20073 (DUF6469)
InterPro	-
eggNOG	-
NR	GeneID:130999895

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781571.1`
2	Cytoplasm	细胞质	0.80000	`XP_057781571.1`
3	Chromosome	染色体	0.00000	`XP_057781571.1`
4	Centromere	着丝粒	0.00000	`XP_057781571.1`
5	Chromatin	染色质	0.00000	`XP_057781571.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2138223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B26,B53,B68,B80
`Chr8:2138237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B86,C13,D5
`Chr8:2138301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr8:2138372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr8:2138456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr8:2138457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,C44,C54
`Chr8:2138504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B86,C13,D5
`Chr8:2138559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C37
`Chr8:2138581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr8:2139117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr8:2139126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr8:2139171`	`C`	`CAG`	2bp_insertion	frameshift_variant	2	B39,C21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781571.1

2863 aa

1432

2863

DUF6469

AAA_11

AAA_19

AAA_12

UvrD-helicase

PF20073 DUF6469 16-218 aa PF13086 AAA_11 248-613 aa PF13245 AAA_19 267-608 aa PF13087 AAA_12 621-817 aa PF00580 UvrD-helicase 1340-1429 aa

XP_057781572.1

2863 aa

1432

2863

DUF6469

AAA_11

AAA_19

AAA_12

UvrD-helicase

PF20073 DUF6469 16-218 aa PF13086 AAA_11 248-613 aa PF13245 AAA_19 267-608 aa PF13087 AAA_12 621-817 aa PF00580 UvrD-helicase 1340-1429 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781571.1`	Pfam	`PF20073`	DUF6469	Domain	16	218	1.8e-89	299.5	Domain of unknown function (DUF6469)
`XP_057781571.1`	Pfam	`PF13086`	AAA_11	Domain	248	613	7.8e-31	108.5	AAA domain
`XP_057781571.1`	Pfam	`PF13245`	AAA_19	Domain	267	608	4.3e-15	56.8	AAA domain
`XP_057781571.1`	Pfam	`PF13087`	AAA_12	Domain	621	817	1.4e-58	198.5	AAA domain
`XP_057781571.1`	Pfam	`PF00580`	UvrD-helicase	Domain	1340	1429	3.7e-12	47.2	UvrD/REP helicase N-terminal domain
`XP_057781572.1`	Pfam	`PF20073`	DUF6469	Domain	16	218	1.8e-89	299.5	Domain of unknown function (DUF6469)
`XP_057781572.1`	Pfam	`PF13086`	AAA_11	Domain	248	613	7.8e-31	108.5	AAA domain
`XP_057781572.1`	Pfam	`PF13245`	AAA_19	Domain	267	608	4.3e-15	56.8	AAA domain
`XP_057781572.1`	Pfam	`PF13087`	AAA_12	Domain	621	817	1.4e-58	198.5	AAA domain
`XP_057781572.1`	Pfam	`PF00580`	UvrD-helicase	Domain	1340	1429	3.7e-12	47.2	UvrD/REP helicase N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925589.1
CGCTCTTTACATTTTCCAACACTATTTCTCACCTTTTTCCACACACACTTTTCATCTTCCCAACTTTTTTAATCAATGAATAAATCTCTCCGATTTCTCACTCTTCTAGTGGAACAACTTTGCTCAATCGTATTGCACGTACGGAAGATTCTGAGAATTTCAGTTTGTGGAGCTGAAAAATGGAGGAAAACTGTTCAGGAACTAGTAACCGATCGTGGCCTAGAGATGATTTTACTGATTTGCTGTTTTCGTGGTCTCTA...

XM_057925588.1
CGCTCTTTACATTTTCCAACACTATTTCTCACCTTTTTCCACACACACTTTTCATCTTCCCAACTTTTTTAATCAATGAATAAATCTCTCCGATTTCTCACTCTTCTAGTGGAACAACTTTGCTCAATCGTATTGCACGTACGGAAGATTCTGAGAATTTCAGTTTGTGGAGCTGAAAAATGGAGGAAAACTGTTCAGGAACTAGTAACCGATCGTGGCCTAGAGATGATTTTACTGATTTGCTGTTTTCGTGGTCTCTA...

CDS

2 records

下载 CDS FASTA

LOC130999895
ATGGAGGAAAACTGTTCAGGAACTAGTAACCGATCGTGGCCTAGAGATGATTTTACTGATTTGCTGTTTTCGTGGTCTCTAGTAGACATTTTTGACGAGGATGTGTACAAGCATCAGGTGGAGAAGATTCCTGAGGTATTCGAAAGTGTGGATCATTATCTTTTATCTTATGCGTACCCGTTATTAGAAGAAACGCGTGCTGCAATCGCTGCTTCCTTGGAAACTGTTTACAAGGCACCTTTCTCTGAAGTGGTATCTCT...

Protein

2 records

下载 Protein FASTA

XP_057781571.1
MEENCSGTSNRSWPRDDFTDLLFSWSLVDIFDEDVYKHQVEKIPEVFESVDHYLLSYAYPLLEETRAAIAASLETVYKAPFSEVVSLGVAKTDSLVYNVKVDNWRNKITDRGKEPYRTLPGDLVLLSDSKPESVSDLQRIGRMNTFASVVNISDDENGDNCSSSAFKLKTAHNVEVDDKKSKSLYVVYLTNITTHKRIWKALKMRRNLKIIEKVLVKNDLGEENCEFCPQGLHSEVEEKFQSTLLSKSNESQLGAIMASI...

XP_057781572.1
MEENCSGTSNRSWPRDDFTDLLFSWSLVDIFDEDVYKHQVEKIPEVFESVDHYLLSYAYPLLEETRAAIAASLETVYKAPFSEVVSLGVAKTDSLVYNVKVDNWRNKITDRGKEPYRTLPGDLVLLSDSKPESVSDLQRIGRMNTFASVVNISDDENGDNCSSSAFKLKTAHNVEVDDKKSKSLYVVYLTNITTHKRIWKALKMRRNLKIIEKVLVKNDLGEENCEFCPQGLHSEVEEKFQSTLLSKSNESQLGAIMASI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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