当前解析结果
SmilChr08G000316| 统一新 Gene ID | SmilChr08G000316 |
|---|---|
| 名称 | SmilChr08G000316 |
| 描述 | probable protein phosphatase 2C 55 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2211531 - 2212286 / + |
| NCBI Gene ID | LOC130997055 |
|---|---|
| GeneID | 130997055 |
| locus_tag | - |
| NCBI Name | LOC130997055 |
| 原始查询 | SmilChr08G000316 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable protein phosphatase 2C 55 |
| 产物 | probable protein phosphatase 2C 55 |
| Arabidopsis | AT4G16580 (AT4G16580)Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:827359] identity=46.5; qcov=0.968; evalue=3.33e-69; confidence=high |
| Rice | Os03g0809300 (OsPP57)- identity=44.9; qcov=0.968; evalue=6.04e-67; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997055 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057778317.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057778317.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057778317.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778317.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778317.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2211578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B140 |
Chr8:2211590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,D6 |
Chr8:2211738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C17,C4,C54 |
Chr8:2211814 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B80,B88 |
Chr8:2211867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,C20,C24,C34,C84 |
Chr8:2211875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr8:2211877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B48,B97,C16 |
Chr8:2211953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B21,B32,B97,C47 |
Chr8:2212023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,D6 |
Chr8:2212028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr8:2212032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C72 |
Chr8:2212058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,A7,B98,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。