当前解析结果
SmilChr08G000334| 统一新 Gene ID | SmilChr08G000334 |
|---|---|
| 名称 | SmilChr08G000334 |
| 描述 | eIF-2-alpha kinase GCN2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2333042 - 2346324 / + |
| NCBI Gene ID | LOC130999923 |
|---|---|
| GeneID | 130999923 |
| locus_tag | - |
| NCBI Name | LOC130999923 |
| 原始查询 | SmilChr08G000334 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | eIF-2-alpha kinase GCN2 |
| 产物 | eIF-2-alpha kinase GCN2 |
| Arabidopsis | AT3G59410 (GCN2)protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825110] identity=61.8; qcov=0.993; evalue=0; confidence=high |
| Rice | Os04g0492600- identity=48.8; qcov=0.203; evalue=4.15e-59; confidence=weak |
| GO | GO:0004694 (eukaryotic translation initiation factor 2alpha kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0006468 (protein phosphorylation); GO:0032543 (mitochondrial translation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03129 (HGTP_anticodon); PF05773 (RWD); PF07714 (PK_Tyr_Ser-Thr); PF12745 (HGTP_anticodon2); PF13393 (tRNA-synt_His) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999923 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057781603.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057781603.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057781606.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781603.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781603.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2333375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B25,B28 |
Chr8:2333384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B25,B28 |
Chr8:2333391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,B88 |
Chr8:2333402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B48,C16 |
Chr8:2333442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B48,C16 |
Chr8:2334580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr8:2334702 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | A7,B120,B37,B50 |
Chr8:2334702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B120,B37,B50 |
Chr8:2334711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B120,B37,B50 |
Chr8:2334716 |
G |
GAA |
2bp_insertion | frameshift_variant | 4 | A7,B120,B37,B50 |
Chr8:2334716 |
G |
GAA |
2bp_insertion | CDS_variant | 4 | A7,B120,B37,B50 |
Chr8:2335666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,C29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781603.1PF05773
RWD 32-142 aa
PF00069
Pkinase 417-721 aa
PF07714
PK_Tyr_Ser-Thr 526-718 aa
PF13393
tRNA-synt_His 881-1110 aa
PF12745
HGTP_anticodon2 1128-1225 aa
PF03129
HGTP_anticodon 1142-1220 aa
XP_057781604.1PF00069
Pkinase 302-606 aa
PF07714
PK_Tyr_Ser-Thr 411-603 aa
PF13393
tRNA-synt_His 766-995 aa
PF12745
HGTP_anticodon2 1013-1110 aa
PF03129
HGTP_anticodon 1027-1105 aa
XP_057781605.1PF00069
Pkinase 299-603 aa
PF07714
PK_Tyr_Ser-Thr 408-600 aa
PF13393
tRNA-synt_His 763-992 aa
PF12745
HGTP_anticodon2 1010-1107 aa
PF03129
HGTP_anticodon 1024-1102 aa
XP_057781606.1PF05773
RWD 32-142 aa
PF00069
Pkinase 417-721 aa
PF07714
PK_Tyr_Ser-Thr 526-718 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781603.1 |
Pfam | PF05773 |
RWD | Domain | 32 | 142 | 1.2e-19 | 71.2 | RWD domain |
XP_057781603.1 |
Pfam | PF00069 |
Pkinase | Domain | 417 | 721 | 3.7e-49 | 168.2 | Protein kinase domain |
XP_057781603.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 526 | 718 | 2.7e-23 | 83.3 | Protein tyrosine and serine/threonine kinase |
XP_057781603.1 |
Pfam | PF13393 |
tRNA-synt_His | Domain | 881 | 1110 | 1.1e-10 | 42.0 | Histidyl-tRNA synthetase |
XP_057781603.1 |
Pfam | PF12745 |
HGTP_anticodon2 | Domain | 1128 | 1225 | 4.1e-09 | 37.1 | Anticodon binding domain of tRNAs |
XP_057781603.1 |
Pfam | PF03129 |
HGTP_anticodon | Domain | 1142 | 1220 | 1.1e-09 | 39.0 | Anticodon binding domain |
XP_057781604.1 |
Pfam | PF00069 |
Pkinase | Domain | 302 | 606 | 3e-49 | 168.5 | Protein kinase domain |
XP_057781604.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 411 | 603 | 2.1e-23 | 83.7 | Protein tyrosine and serine/threonine kinase |
XP_057781604.1 |
Pfam | PF13393 |
tRNA-synt_His | Domain | 766 | 995 | 8.6e-11 | 42.3 | Histidyl-tRNA synthetase |
XP_057781604.1 |
Pfam | PF12745 |
HGTP_anticodon2 | Domain | 1013 | 1110 | 3.6e-09 | 37.3 | Anticodon binding domain of tRNAs |
XP_057781604.1 |
Pfam | PF03129 |
HGTP_anticodon | Domain | 1027 | 1105 | 9.4e-10 | 39.2 | Anticodon binding domain |
XP_057781605.1 |
Pfam | PF00069 |
Pkinase | Domain | 299 | 603 | 3e-49 | 168.5 | Protein kinase domain |
XP_057781605.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 408 | 600 | 2e-23 | 83.7 | Protein tyrosine and serine/threonine kinase |
XP_057781605.1 |
Pfam | PF13393 |
tRNA-synt_His | Domain | 763 | 992 | 8.6e-11 | 42.3 | Histidyl-tRNA synthetase |
XP_057781605.1 |
Pfam | PF12745 |
HGTP_anticodon2 | Domain | 1010 | 1107 | 3.6e-09 | 37.3 | Anticodon binding domain of tRNAs |
XP_057781605.1 |
Pfam | PF03129 |
HGTP_anticodon | Domain | 1024 | 1102 | 9.4e-10 | 39.2 | Anticodon binding domain |
XP_057781606.1 |
Pfam | PF05773 |
RWD | Domain | 32 | 142 | 9.8e-20 | 71.5 | RWD domain |
XP_057781606.1 |
Pfam | PF00069 |
Pkinase | Domain | 417 | 721 | 2.5e-49 | 168.8 | Protein kinase domain |
XP_057781606.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 526 | 718 | 1.8e-23 | 83.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。