Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000341`

染色体: Chr08 坐标: 2371275-2374326 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000341`
名称	SmilChr08G000341
描述	chitinase-like protein 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2371275 - 2374326 / `-`

ID 对照

NCBI Gene ID	`LOC130999929`
GeneID	`130999929`
locus_tag	`-`
NCBI Name	`LOC130999929`
原始查询	`SmilChr08G000341`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chitinase-like protein 1
产物	chitinase-like protein 1
Arabidopsis	`AT1G05850` (POM1) Chitinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837095] identity=73.2; qcov=0.978; evalue=0; confidence=high
Rice	`Os09g0494200` (BC15) - identity=69.1; qcov=0.95; evalue=5.74e-156; confidence=high
GO	GO:0004568 (chitinase activity); GO:0005975 (carbohydrate metabolic process); GO:0006032 (chitin catabolic process); GO:0016998 (cell wall macromolecule catabolic process)
KEGG	-
Pfam	PF00182 (Glyco_hydro_19)
InterPro	-
eggNOG	-
NR	GeneID:130999929

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057781614.1`
2	Vacuole	液泡	0.60000	`XP_057781614.1`
3	Cell wall	细胞壁	0.20000	`XP_057781614.1`
4	Nucleus	细胞核	0.00000	`XP_057781614.1`
5	Chromosome	染色体	0.00000	`XP_057781614.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2371566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B53,B7,B80,C48
`Chr8:2371575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,B49,C19,C24
`Chr8:2371581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B119,B123,B44,B97,C54
`Chr8:2371602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,B49,C19,C24
`Chr8:2371668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C11,C20,C25,C69
`Chr8:2371691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B34,B64,C3,D4
`Chr8:2371872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,C85
`Chr8:2373531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:2373776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B115
`Chr8:2373789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781614.1

320 aa

160

320

Glyco_hydro_19

PF00182 Glyco_hydro_19 68-295 aa

XP_057781615.1

320 aa

160

320

Glyco_hydro_19

PF00182 Glyco_hydro_19 68-295 aa

XP_057781616.1

320 aa

160

320

Glyco_hydro_19

PF00182 Glyco_hydro_19 68-295 aa

XP_057781617.1

320 aa

160

320

Glyco_hydro_19

PF00182 Glyco_hydro_19 68-295 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781614.1`	Pfam	`PF00182`	Glyco_hydro_19	Domain	68	295	4.3e-63	213.9	Chitinase class I
`XP_057781615.1`	Pfam	`PF00182`	Glyco_hydro_19	Domain	68	295	4.3e-63	213.9	Chitinase class I
`XP_057781616.1`	Pfam	`PF00182`	Glyco_hydro_19	Domain	68	295	4.3e-63	213.9	Chitinase class I
`XP_057781617.1`	Pfam	`PF00182`	Glyco_hydro_19	Domain	68	295	4.3e-63	213.9	Chitinase class I

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925634.1
CAATAATTATTTTAATAAATGATGAAAAATATGAAAAGCATTAAAAAAAAAAGGAAAAATTTAAGAACGTGAAAGAGACAGCTGATCTAACTAACACAGTCTGTCGTCGGAAAATGGAGGCGAGGAGCGGAGGATTCGCGAAGATCGGTCTGGCGATCTGCGTGATGGCAATGGCGGCGTGTTTGGCCGGCGCGGCGGACAAGGAAATCAAGGTGAGGACGGTGAGGGGGGAGAAGGTGTGCACCCAAGGATGGGAGTGC...

XM_057925631.1
AAGCATTAAAAAAAAAAGGAAAAATTTAAGAACGTGAAAGAGACAGCTGATCTAACTAACACAGTCTGTCGTCGGTGGGATTCTTTCTCCTCTTCTGTGTTTTCTCTTTGCATTTCATCCAAACAAATTAAATCCCTAATTTTCACCATTTTTTTCTGATTATTTCCTCCATTCTCTGCAAAAAAATCCAAAAAAAAAGGAAAAATTATTTTAGAGAGAAGAATCTCGAGTTTTCACTGAGTGAAAATGGAGGCGAGGAG...

CDS

4 records

下载 CDS FASTA

LOC130999929
ATGGAGGCGAGGAGCGGAGGATTCGCGAAGATCGGTCTGGCGATCTGCGTGATGGCAATGGCGGCGTGTTTGGCCGGCGCGGCGGACAAGGAAATCAAGGTGAGGACGGTGAGGGGGGAGAAGGTGTGCACCCAAGGATGGGAGTGCAACGGCTGGTCCAAATTCTGCTGCAATCTCACCATCTCGGACATCTTCCAGACCTACCAGTTCGAGAATCTCTTCTCGAAGAGGAACTCGCCGGTGGCGAACGCCGTCGGCTT...

Protein

4 records

下载 Protein FASTA

XP_057781614.1
MEARSGGFAKIGLAICVMAMAACLAGAADKEIKVRTVRGEKVCTQGWECNGWSKFCCNLTISDIFQTYQFENLFSKRNSPVANAVGFWDYRSFILAASMFEHLGFGTTGGKLMQMKEIAAFLGHVGCKTSCGYGVATGGPLAWGLCFNKEMSPSQKYCDDFYKYDYPCAPGAEYYGRGAIPIYWNYNYGAIGKGINQDLLNHPEYVEQNATIAFQAAIYRWMTSVKKKQPSAHDVFVGNWKPTKNDTLAKRFPGFGSTMN...

XP_057781615.1
MEARSGGFAKIGLAICVMAMAACLAGAADKEIKVRTVRGEKVCTQGWECNGWSKFCCNLTISDIFQTYQFENLFSKRNSPVANAVGFWDYRSFILAASMFEHLGFGTTGGKLMQMKEIAAFLGHVGCKTSCGYGVATGGPLAWGLCFNKEMSPSQKYCDDFYKYDYPCAPGAEYYGRGAIPIYWNYNYGAIGKGINQDLLNHPEYVEQNATIAFQAAIYRWMTSVKKKQPSAHDVFVGNWKPTKNDTLAKRFPGFGSTMN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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