当前解析结果
SmilChr08G000342| 统一新 Gene ID | SmilChr08G000342 |
|---|---|
| 名称 | SmilChr08G000342 |
| 描述 | inositol transporter 1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2378653 - 2383978 / + |
| NCBI Gene ID | LOC130999932 |
|---|---|
| GeneID | 130999932 |
| locus_tag | - |
| NCBI Name | LOC130999932 |
| 原始查询 | SmilChr08G000342 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | inositol transporter 1 |
| 产物 | inositol transporter 1 |
| Arabidopsis | AT2G43330 (INT1)inositol transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:818934] identity=75.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0491700- identity=71.6; qcov=1; evalue=0; confidence=high |
| GO | GO:0005366 (myo-inositol:proton symporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999932 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057781621.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057781621.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781621.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781621.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781621.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2379000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:2379084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr8:2380179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,C13 |
Chr8:2380670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,B93 |
Chr8:2380693 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,D10 |
Chr8:2380855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C75 |
Chr8:2382591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr8:2382718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:2382788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr8:2383172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:2383184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:2383199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B73,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781621.1PF00083
Sugar_tr 32-475 aa
PF07690
MFS_1 37-424 aa
PF07690
MFS_1 285-464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781621.1 |
Pfam | PF00083 |
Sugar_tr | Family | 32 | 475 | 5.3e-125 | 418.5 | Sugar (and other) transporter |
XP_057781621.1 |
Pfam | PF07690 |
MFS_1 | Family | 37 | 424 | 6.3e-39 | 134.6 | Major Facilitator Superfamily |
XP_057781621.1 |
Pfam | PF07690 |
MFS_1 | Family | 285 | 464 | 6.3e-39 | 134.6 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。