Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000362`

染色体: Chr08 坐标: 2504978-2508320 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000362`
名称	SmilChr08G000362
描述	DNA repair protein RAD51 homolog 4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2504978 - 2508320 / `+`

ID 对照

NCBI Gene ID	`LOC130999954`
GeneID	`130999954`
locus_tag	`-`
NCBI Name	`LOC130999954`
原始查询	`SmilChr08G000362`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA repair protein RAD51 homolog 4
产物	DNA repair protein RAD51 homolog 4
Arabidopsis	`AT1G07745` (RAD51D) DNA repair RAD51-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837289] identity=54.6; qcov=0.937; evalue=2.81e-84; confidence=high
Rice	`Os09g0104200` (RAD51D) - identity=51.9; qcov=0.63; evalue=7.61e-44; confidence=medium
GO	GO:0000400 (four-way junction DNA binding); GO:0000723 (telomere maintenance); GO:0000724 (double-strand break repair via homologous recombination); GO:0003697 (single-stranded DNA binding); GO:0005524 (ATP binding); GO:0005657 (replication fork); GO:0005813 (centrosome); GO:0007131 (reciprocal meiotic recombination); GO:0033063 (Rad51B-Rad51C-Rad51D-XRCC2 complex); GO:0042148 (DNA strand invasion); GO:0140664 (ATP-dependent DNA damage sensor activity)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF08423 (Rad51); PF13481 (AAA_25)
InterPro	-
eggNOG	-
NR	GeneID:130999954

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781646.1`
2	Cytoplasm	细胞质	1.00000	`XP_057781649.1`
3	Cytosol	细胞质基质	0.80000	`XP_057781645.1`
4	Nucleoplasm	核质	0.80000	`XP_057781647.1`
5	Chromosome	染色体	0.60000	`XP_057781648.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2505162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B52,B91,C20
`Chr8:2505483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr8:2505663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:2505816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C37,C57
`Chr8:2505838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr8:2505853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B31,B81,C1,D1
`Chr8:2505858`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C20,D8
`Chr8:2506093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr8:2506101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C37,C57
`Chr8:2506103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:2506612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:2507448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B22,C62,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781645.1

328 aa

164

328

Rad51

AAA_25

PF08423 Rad51 84-274 aa PF13481 AAA_25 91-255 aa

XP_057781646.1

312 aa

156

312

Rad51

AAA_25

PF08423 Rad51 84-274 aa PF13481 AAA_25 91-255 aa

XP_057781647.1

291 aa

146

291

Rad51

PF08423 Rad51 84-151 aa PF08423 Rad51 157-237 aa

XP_057781648.1

275 aa

138

275

Rad51

PF08423 Rad51 84-151 aa PF08423 Rad51 157-237 aa

XP_057781649.1

254 aa

127

254

Rad51

AAA_25

PF08423 Rad51 84-216 aa PF13481 AAA_25 91-217 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781645.1`	Pfam	`PF08423`	Rad51	Domain	84	274	1e-19	71.5	Rad51
`XP_057781645.1`	Pfam	`PF13481`	AAA_25	Domain	91	255	6e-07	30.0	AAA domain
`XP_057781646.1`	Pfam	`PF08423`	Rad51	Domain	84	274	8.3e-20	71.8	Rad51
`XP_057781646.1`	Pfam	`PF13481`	AAA_25	Domain	91	255	5.3e-07	30.2	AAA domain
`XP_057781647.1`	Pfam	`PF08423`	Rad51	Domain	84	151	1.2e-17	64.8	Rad51
`XP_057781647.1`	Pfam	`PF08423`	Rad51	Domain	157	237	1.2e-17	64.8	Rad51
`XP_057781648.1`	Pfam	`PF08423`	Rad51	Domain	84	151	8.8e-18	65.2	Rad51
`XP_057781648.1`	Pfam	`PF08423`	Rad51	Domain	157	237	8.8e-18	65.2	Rad51
`XP_057781649.1`	Pfam	`PF08423`	Rad51	Domain	84	216	2.8e-12	47.2	Rad51
`XP_057781649.1`	Pfam	`PF13481`	AAA_25	Domain	91	217	2.2e-06	28.1	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057925663.1
AAAAAAAATCCGAATAATCGTTGTAAAGAAATGGCGCTCTTTTTCCTTCCTCTCCTCCTTTTTCCCTCCATTTATCTGTTTTATTTTTTCCAATTAGGGCAAAATAGATGGCGCCATTAGAAGATTTAGAGCGAATCTATCCGATCATCGATTCCGATTTCCGCATGTTCTGTGCTTCTCACGGCATTTTCACCGATGAAGATTTCCTTTTGCATGATCTTTCTGCATTAGAGGCTTTTGCTGCACCGGAAAAATTGAAA...

XM_057925662.1
AATCCGAATAATCGTTGTAAAGAAATGGCGCTCTTTTTCCTTCCTCTCCTCCTTTTTCCCTCCATTTATCTGTTTTATTTTTTCCAATTAGGGCAAAATAGATGGCGCCATTAGAAGATTTAGAGCGAATCTATCCGATCATCGATTCCGATTTCCGCATGTTCTGTGCTTCTCACGGCATTTTCACCGATGAAGATTTCCTTTTGCATGATCTTTCTGCATTAGAGGCTTTTGCTGCACCGGAAAAATTGAAACAGGGA...

CDS

5 records

下载 CDS FASTA

LOC130999954
ATGGCGCCATTAGAAGATTTAGAGCGAATCTATCCGATCATCGATTCCGATTTCCGCATGTTCTGTGCTTCTCACGGCATTTTCACCGATGAAGATTTCCTTTTGCATGATCTTTCTGCATTAGAGGCTTTTGCTGCACCGGAAAAATTGAAACAGGGAATTAAGCAAATAATCTCTATAATGGAGAGTCGGCAACGACCTTGGCTAAATGGTCTGGAATTGTTAGAAGATGCTCAACTTAACAAGTGTACTCTATCGAC...

Protein

5 records

下载 Protein FASTA

XP_057781645.1
MAPLEDLERIYPIIDSDFRMFCASHGIFTDEDFLLHDLSALEAFAAPEKLKQGIKQIISIMESRQRPWLNGLELLEDAQLNKCTLSTGCERIDVLLQGGLREGHVTELVGPSCSGKTQVCLKAASHVARNSLGKVVYFDTGNSFSPKRIAQFLSLSSDASTAEFNKTVERVMRSIVCHSVFDIFTLLDMLRQLINNLKSQIDFQVRMLIIDSLSSLIAPVLGGGGAHGHALMVTAGFLLKEIAHEFNVCVVVTNHMVAGE...

XP_057781646.1
MAPLEDLERIYPIIDSDFRMFCASHGIFTDEDFLLHDLSALEAFAAPEKLKQGIKQIISIMESRQRPWLNGLELLEDAQLNKCTLSTGCERIDVLLQGGLREGHVTELVGPSCSGKTQVCLKAASHVARNSLGKVVYFDTGNSFSPKRIAQFLSLSSDASTAEFNKTVERVMRSIVCHSVFDIFTLLDMLRQLINNLKSQIDFQVRMLIIDSLSSLIAPVLGGGGAHGHALMVTAGFLLKEIAHEFNVCVVVTNHMVAGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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