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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000368

染色体: Chr08 坐标: 2536589-2538992 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000368
名称SmilChr08G000368
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向2536589 - 2538992 / +

ID 对照

NCBI Gene IDLOC130999961
GeneID130999961
locus_tag-
NCBI NameLOC130999961
原始查询SmilChr08G000368

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=38.1; qcov=0.873; evalue=2.53e-130; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.4; qcov=0.875; evalue=1.65e-87; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999961

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057781656.1
2 Chloroplast 叶绿体 0.20000 XP_057781656.1
3 Nucleus 细胞核 0.00000 XP_057781656.1
4 Chromosome 染色体 0.00000 XP_057781656.1
5 Centromere 着丝粒 0.00000 XP_057781656.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:2536716 G A EMS_canonical_SNV CDS_variant 4 B102,B106,B18,C21
Chr8:2536776 G A EMS_canonical_SNV stop_gained 2 A19,C41
Chr8:2536776 G A EMS_canonical_SNV CDS_variant 2 A19,C41
Chr8:2536864 C T EMS_canonical_SNV CDS_variant 2 D11,D8
Chr8:2536915 C T EMS_canonical_SNV CDS_variant 2 A11,C77
Chr8:2536920 G A EMS_canonical_SNV CDS_variant 1 B18
Chr8:2536925 G A EMS_canonical_SNV CDS_variant 5 A15,B114,B18,C54,C57
Chr8:2536979 C CA 1bp_insertion frameshift_variant 3 A18,C80,D2
Chr8:2536979 C CA 1bp_insertion CDS_variant 3 A18,C80,D2
Chr8:2537000 G A EMS_canonical_SNV CDS_variant 1 B44
Chr8:2537111 G A EMS_canonical_SNV CDS_variant 1 C51
Chr8:2537114 C T EMS_canonical_SNV CDS_variant 3 A7,C12,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781656.1
598 aa
N
1
299
598
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
TPR_24
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR
PPR_2
PPR
C
PF13041 PPR_2 74-122 aa PF01535 PPR 78-107 aa PF13812 PPR_3 98-154 aa PF12854 PPR_1 141-171 aa PF01535 PPR 148-176 aa PF01535 PPR 187-211 aa PF13041 PPR_2 187-229 aa PF13812 PPR_3 204-260 aa PF12854 PPR_1 213-243 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 253-283 aa PF13812 PPR_3 274-330 aa PF17177 PPR_long 274-374 aa PF23276 TPR_24 277-379 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 286-333 aa PF01535 PPR 288-318 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 320-357 aa PF01535 PPR 323-353 aa PF13812 PPR_3 344-399 aa PF12854 PPR_1 351-380 aa PF13041 PPR_2 356-380 aa PF01535 PPR 358-385 aa PF13041 PPR_2 391-439 aa PF01535 PPR 394-422 aa PF13812 PPR_3 413-470 aa PF17177 PPR_long 414-561 aa PF12854 PPR_1 423-450 aa PF01535 PPR 428-450 aa PF13812 PPR_3 452-507 aa PF12854 PPR_1 456-487 aa PF13041 PPR_2 460-497 aa PF01535 PPR 463-493 aa PF23276 TPR_24 468-578 aa PF12854 PPR_1 491-524 aa PF01535 PPR 499-528 aa PF13041 PPR_2 499-542 aa PF01535 PPR 533-563 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 74 122 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 78 107 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF13812 PPR_3 Repeat 98 154 8.6e-67 221.9 Pentatricopeptide repeat domain
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 141 171 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF01535 PPR Repeat 148 176 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF01535 PPR Repeat 187 211 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 187 229 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF13812 PPR_3 Repeat 204 260 8.6e-67 221.9 Pentatricopeptide repeat domain
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 213 243 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 215 264 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 219 248 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 246 279 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 251 299 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 253 283 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF13812 PPR_3 Repeat 274 330 8.6e-67 221.9 Pentatricopeptide repeat domain
XP_057781656.1 Pfam PF17177 PPR_long Repeat 274 374 6.4e-31 108.1 Pentacotripeptide-repeat region of PRORP
XP_057781656.1 Pfam PF23276 TPR_24 Repeat 277 379 2.2e-33 115.7 Pentatricopeptide repeat-containing protein
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 282 314 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 286 333 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 288 318 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 316 349 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 320 357 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 323 353 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF13812 PPR_3 Repeat 344 399 8.6e-67 221.9 Pentatricopeptide repeat domain
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 351 380 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 356 380 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 358 385 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 391 439 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 394 422 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF13812 PPR_3 Repeat 413 470 8.6e-67 221.9 Pentatricopeptide repeat domain
XP_057781656.1 Pfam PF17177 PPR_long Repeat 414 561 6.4e-31 108.1 Pentacotripeptide-repeat region of PRORP
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 423 450 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF01535 PPR Repeat 428 450 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF13812 PPR_3 Repeat 452 507 8.6e-67 221.9 Pentatricopeptide repeat domain
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 456 487 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 460 497 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 463 493 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF23276 TPR_24 Repeat 468 578 2.2e-33 115.7 Pentatricopeptide repeat-containing protein
XP_057781656.1 Pfam PF12854 PPR_1 Repeat 491 524 1.2e-122 400.0 PPR repeat
XP_057781656.1 Pfam PF01535 PPR Repeat 499 528 7e-96 308.7 PPR repeat
XP_057781656.1 Pfam PF13041 PPR_2 Repeat 499 542 1.6e-139 454.6 PPR repeat family
XP_057781656.1 Pfam PF01535 PPR Repeat 533 563 7e-96 308.7 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925673.1
GAAAGTCGCCTTAATCCAAAATCGAAAACTTCATCAGTTGCAATTTCATGCCCTTTTTCAGATTCAATCACAACTCCTAACCAAAAGAGAGAAAAAAAGATTCAAACTCGCCGATTAACGATGATGAGGAGAAGAGCTGCTGTTTCTGCAATAAATTTGATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTCGATTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCA...

CDS

1 records

下载 CDS FASTA
LOC130999961
ATGATGAGGAGAAGAGCTGCTGTTTCTGCAATAAATTTGATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTCGATTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCACAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCAAAAAATTAAGAGCATGCGGCCGGAGCCTTCTGTTCTCGTGTATAATAAACTTATGAGTGTTAGTGC...

Protein

1 records

下载 Protein FASTA
XP_057781656.1
MMRRRAAVSAINLIHGRGFLNRWSHKSGILSPRFSLFSSEAFQPKQHRIDFSCVKELNDAIELFQKIKSMRPEPSVLVYNKLMSVSAKIEQYSFALDVFDEMLRMGVHVNVYTMNIAVNCCCLLKDIKSGFAIMGLYFKSGCGPDVTTFNTLIKGLFLNQKVVEAGKFFNKILRFRICEPDHCMILAMVDGLCKSGNVLPARDLVRRLERSRLRPDVKTYNALLDGLCKCGMVDDAFHLLSRMINKGISPNVVTYSSMIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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