当前解析结果
SmilChr08G000369| 统一新 Gene ID | SmilChr08G000369 |
|---|---|
| 名称 | SmilChr08G000369 |
| 描述 | uncharacterized SmilChr08G000369 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2540335 - 2542918 / + |
| NCBI Gene ID | LOC130997061 |
|---|---|
| GeneID | 130997061 |
| locus_tag | - |
| NCBI Name | LOC130997061 |
| 原始查询 | SmilChr08G000369 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0317000; species=rice; confidence=weak |
| 产物 | hit=Os03g0317000; species=rice; confidence=weak |
| Arabidopsis | AT1G48110 (ECT7)evolutionarily conserved C-terminal region 7 [Source:NCBI gene (formerly Entrezgene);Acc:841229] identity=57.6; qcov=0.29; evalue=5.22e-49; confidence=weak |
| Rice | Os03g0317000- identity=60.1; qcov=0.258; evalue=2.36e-49; confidence=weak |
| GO | GO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0061157 (mRNA destabilization) |
| KEGG | - |
| Pfam | PF03478 (Beta-prop_KIB1-4); PF04146 (YTH); PF07734 (FBA_1); PF08268 (FBA_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997061 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778321.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057778321.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057778321.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778321.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778321.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2540401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr8:2540431 |
CG |
C |
1bp_deletion | frameshift_variant | 21 | A13,B101,B112,B118,B119,B120,B126,B25,B42,B43,B61,B82,C24,C3,C30,C31,C38,C40,C72,C74,C80 |
Chr8:2540461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,D2 |
Chr8:2540486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,B84 |
Chr8:2540522 |
C |
CA |
1bp_insertion | frameshift_variant | 8 | A8,B113,B2,B36,B46,B71,C3,C60 |
Chr8:2540524 |
C |
CA |
1bp_insertion | frameshift_variant | 8 | A8,B113,B2,B36,B46,B71,C3,C60 |
Chr8:2540529 |
TTC |
T |
2bp_deletion | frameshift_variant | 8 | A8,B113,B2,B36,B46,B71,C3,C60 |
Chr8:2540618 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C24 |
Chr8:2540618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:2540620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr8:2540624 |
C |
CAG |
2bp_insertion | frameshift_variant | 4 | B11,B133,B22,D2 |
Chr8:2540624 |
C |
CAG |
2bp_insertion | CDS_variant | 4 | B11,B133,B22,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778321.1PF08268
FBA_3 46-212 aa
PF03478
Beta-prop_KIB1-4 51-220 aa
PF07734
FBA_1 54-218 aa
PF04146
YTH 430-571 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778321.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 46 | 212 | 4.7e-15 | 56.1 | F-box associated beta propeller domain |
XP_057778321.1 |
Pfam | PF03478 |
Beta-prop_KIB1-4 | Repeat | 51 | 220 | 4.1e-07 | 30.5 | KIB1-4 beta-propeller |
XP_057778321.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 54 | 218 | 4.6e-22 | 79.1 | F-box associated beta propeller domain |
XP_057778321.1 |
Pfam | PF04146 |
YTH | Domain | 430 | 571 | 4.4e-30 | 104.9 | YT521-B-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。