当前解析结果
SmilChr08G000385| 统一新 Gene ID | SmilChr08G000385 |
|---|---|
| 名称 | SmilChr08G000385 |
| 描述 | putative leucine-rich repeat receptor-like protein kinase At2g19210 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2702802 - 2708850 / - |
| NCBI Gene ID | LOC130999977 |
|---|---|
| GeneID | 130999977 |
| locus_tag | - |
| NCBI Name | LOC130999977 |
| 原始查询 | SmilChr08G000385 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative leucine-rich repeat receptor-like protein kinase At2g19210 |
| 产物 | putative leucine-rich repeat receptor-like protein kinase At2g19210 |
| Arabidopsis | AT2G19210 (AT2G19210)Leucine-rich repeat transmembrane protein kinase protein [Source:NCBI gene (formerly Entrezgene);Acc:816438] identity=32.9; qcov=0.992; evalue=6.46e-71; confidence=low |
| Rice | Os09g0355400- identity=33.7; qcov=0.975; evalue=7.37e-70; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12819 (Malectin_like); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999977 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.60000 | XP_057781674.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057781674.1 |
| 3 | Secreted | 分泌到胞外 | 0.40000 | XP_057781674.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781674.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781674.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2703062 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B37 |
Chr8:2703086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,C20,C58 |
Chr8:2703587 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B133,C16 |
Chr8:2703587 |
T |
TA |
1bp_insertion | CDS_variant | 2 | B133,C16 |
Chr8:2703601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:2703611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr8:2703624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,B47 |
Chr8:2704010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B9,C32,C45,C68,C78 |
Chr8:2704032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr8:2704035 |
CT |
C |
1bp_deletion | frameshift_variant | 7 | B109,B29,B39,B79,B98,C46,C73 |
Chr8:2704178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr8:2704183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B129,C39,C73,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781674.1PF12819
Malectin_like 28-346 aa
PF13855
LRR_8 400-459 aa
PF00560
LRR_1 425-446 aa
PF00560
LRR_1 448-468 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781674.1 |
Pfam | PF12819 |
Malectin_like | Domain | 28 | 346 | 2.8e-79 | 267.5 | Malectin-like domain |
XP_057781674.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 400 | 459 | 2.7e-06 | 27.8 | Leucine rich repeat |
XP_057781674.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 425 | 446 | 3.5e-07 | 29.7 | Leucine Rich Repeat |
XP_057781674.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 448 | 468 | 3.5e-07 | 29.7 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。