当前解析结果
SmilChr08G000387| 统一新 Gene ID | SmilChr08G000387 |
|---|---|
| 名称 | SmilChr08G000387 |
| 描述 | uncharacterized protein At1g24485-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2716706 - 2717412 / - |
| NCBI Gene ID | LOC130997124 |
|---|---|
| GeneID | 130997124 |
| locus_tag | - |
| NCBI Name | LOC130997124 |
| 原始查询 | SmilChr08G000387 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:823773]; symbol=AT3G46280; hit=AT3G46280; species=arabidopsis; confidence=medium |
| 产物 | kinase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:823773]; symbol=AT3G46280; hit=AT3G46280; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G46280 (AT3G46280)kinase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:823773] identity=36.1; qcov=1; evalue=1.46e-33; confidence=medium |
| Rice | Os05g0524550- identity=36.1; qcov=0.906; evalue=1.07e-25; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997124 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057778369.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057778369.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778369.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778369.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778369.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2716709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,B27,B41,C77 |
Chr8:2716722 |
GT |
G |
1bp_deletion | frameshift_variant | 16 | A1,A10,A16,A3,B107,B136,B66,B76,B90,B92,C16,C33,C38,C47,C81,D3 |
Chr8:2716724 |
ATC |
A |
2bp_deletion | frameshift_variant | 16 | A1,A10,A16,A3,B107,B136,B66,B76,B90,B92,C16,C33,C38,C47,C81,D3 |
Chr8:2716841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B136,B66,C16,C33,C38 |
Chr8:2716919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,C71 |
Chr8:2716940 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:2717056 |
AGC |
A |
2bp_deletion | frameshift_variant | 53 | A1,A16,A21,A3,A4,B100,B102,B108,B11,B110,B115,B122,B135,B136,B140,B21,B22,B24,B28,B32,B35,B42,B43,B46,B47,B48,B53,B59,B66,B67,B71,B72,B78,B83,B96,B97,C13,C16,C18,C20,C25,C28,C33,C37,C52,C54,C64,C66,C78,C82,C9,D11,D9 |
Chr8:2717059 |
C |
CTT |
2bp_insertion | frameshift_variant | 49 | A1,A16,A21,A3,A4,B100,B102,B108,B11,B110,B115,B122,B135,B136,B140,B21,B22,B28,B32,B35,B42,B43,B46,B47,B48,B53,B59,B66,B67,B71,B72,B83,B96,B97,C16,C18,C20,C25,C28,C33,C37,C52,C54,C64,C66,C82,C9,D11,D9 |
Chr8:2717107 |
C |
CCG |
2bp_insertion | frameshift_variant | 1 | B29 |
Chr8:2717107 |
C |
CCG |
2bp_insertion | CDS_variant | 1 | B29 |
Chr8:2717135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B29,B48,C16 |
Chr8:2717174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B102,B28,B32,B47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778369.1PF12819
Malectin_like 28-202 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778369.1 |
Pfam | PF12819 |
Malectin_like | Domain | 28 | 202 | 2.1e-46 | 159.4 | Malectin-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。