当前解析结果
SmilChr08G000388| 统一新 Gene ID | SmilChr08G000388 |
|---|---|
| 名称 | SmilChr08G000388 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At5g59680 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2720012 - 2724308 / - |
| NCBI Gene ID | LOC130999979 |
|---|---|
| GeneID | 130999979 |
| locus_tag | - |
| NCBI Name | LOC130999979 |
| 原始查询 | SmilChr08G000388 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At5g59680 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At5g59680 |
| Arabidopsis | AT4G29990 (AT4G29990)Leucine-rich repeat transmembrane protein kinase protein [Source:NCBI gene (formerly Entrezgene);Acc:829122] identity=32.7; qcov=0.97; evalue=5.54e-75; confidence=low |
| Rice | Os09g0355400- identity=32.9; qcov=0.987; evalue=8.99e-67; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12799 (LRR_4); PF12819 (Malectin_like); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999979 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.60000 | XP_057781676.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057781676.1 |
| 3 | Secreted | 分泌到胞外 | 0.40000 | XP_057781676.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781676.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781676.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2720238 |
TA |
T |
1bp_deletion | frameshift_variant | 5 | A15,B49,C54,C82,D11 |
Chr8:2720238 |
TA |
T |
1bp_deletion | CDS_variant | 5 | A15,B49,C54,C82,D11 |
Chr8:2720245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B61,C78 |
Chr8:2720247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B120,B125,B89,C41 |
Chr8:2720304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:2720305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr8:2720312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr8:2720324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B49,C54,D11 |
Chr8:2720346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,C86,D10 |
Chr8:2720356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B106,B14,C82 |
Chr8:2720368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C19,C21,C24,C57 |
Chr8:2720376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781676.1PF12819
Malectin_like 30-347 aa
PF00560
LRR_1 425-446 aa
PF12799
LRR_4 425-459 aa
PF13855
LRR_8 425-473 aa
PF00560
LRR_1 448-468 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781676.1 |
Pfam | PF12819 |
Malectin_like | Domain | 30 | 347 | 5e-74 | 250.3 | Malectin-like domain |
XP_057781676.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 425 | 446 | 4.6e-08 | 32.4 | Leucine Rich Repeat |
XP_057781676.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 425 | 459 | 2.2e-07 | 31.6 | Leucine Rich repeats (2 copies) |
XP_057781676.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 425 | 473 | 4.4e-07 | 30.3 | Leucine rich repeat |
XP_057781676.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 448 | 468 | 4.6e-08 | 32.4 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。