当前解析结果
SmilChr08G000391| 统一新 Gene ID | SmilChr08G000391 |
|---|---|
| 名称 | SmilChr08G000391 |
| 描述 | receptor-like protein kinase HERK 1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2743715 - 2746932 / + |
| NCBI Gene ID | LOC130999982 |
|---|---|
| GeneID | 130999982 |
| locus_tag | - |
| NCBI Name | LOC130999982 |
| 原始查询 | SmilChr08G000391 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase HERK 1 |
| 产物 | receptor-like protein kinase HERK 1 |
| Arabidopsis | AT3G46290 (HERK1)hercules receptor kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:823774] identity=62.7; qcov=1; evalue=0; confidence=high |
| Rice | Os06g0334300 (OsCrRLK1L14)- identity=57.5; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999982 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781679.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781679.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781679.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781679.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781679.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2744199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr8:2744333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:2744352 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:2744380 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | A18,A22,B36,B77,B95,C29 |
Chr8:2744385 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B9,C45 |
Chr8:2744414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,A22,B124,B77,C29 |
Chr8:2744479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:2744487 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | B124 |
Chr8:2744487 |
A |
AG |
1bp_insertion | CDS_variant | 1 | B124 |
Chr8:2744503 |
G |
GAT |
2bp_insertion | frameshift_variant | 8 | B128,B19,B51,B54,B86,C31,C4,C55 |
Chr8:2744521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B18,B44,C48,D7 |
Chr8:2744611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781679.1PF11721
Malectin 30-161 aa
PF12819
Malectin_like 32-382 aa
PF11721
Malectin 207-343 aa
PF07714
PK_Tyr_Ser-Thr 493-687 aa
PF00069
Pkinase 493-702 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781679.1 |
Pfam | PF11721 |
Malectin | Domain | 30 | 161 | 5.2e-14 | 53.3 | Malectin domain |
XP_057781679.1 |
Pfam | PF12819 |
Malectin_like | Domain | 32 | 382 | 1.3e-28 | 101.0 | Malectin-like domain |
XP_057781679.1 |
Pfam | PF11721 |
Malectin | Domain | 207 | 343 | 5.2e-14 | 53.3 | Malectin domain |
XP_057781679.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 493 | 687 | 2.1e-47 | 162.3 | Protein tyrosine and serine/threonine kinase |
XP_057781679.1 |
Pfam | PF00069 |
Pkinase | Domain | 493 | 702 | 3.5e-42 | 145.4 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。